RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CDH18Q13634 790 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 RCN1Q15293 331 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 STX1AQ16623 288 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 ANKRD55Q3KP44 614 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 RABGAP1LQ5R372 815 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 IL23RQ5VWK5 629 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 NKAIN2Q5VXU1 208 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 FAM159AQ6UWV7 190 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 RAD9BQ6WBX8 426 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SLC16A12Q6ZSM3 486 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 GCNT2Q8N0V5 402 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 OR10Q1Q8NGQ4 319 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 FGFBP3Q8TAT2 258 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 THAP6Q8TBB0 222 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 CCDC107Q8WV48 283 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SMG7Q92540 1137 aaKnown RBP5.28□□□□□ -1.56
VPS53-219ENST00000576019 MCHR2Q969V1 340 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 ZNF707Q96C28 371 aaPredicted RBP5.28□□□□□ -1.56
VPS53-219ENST00000576019 LGALS12Q96DT0 336 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 TPD52L3Q96J77 140 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 LRR1Q96L50 414 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 FAM20AQ96MK3 541 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 SLC38A3Q99624 504 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 ALG12Q9BV10 488 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 VN1R1Q9GZP7 353 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 ZDHHC6Q9H6R6 413 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 METTL7AQ9H8H3 244 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 CALHM2Q9HA72 323 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 ASB6Q9NWX5 421 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 KLHL8Q9P2G9 620 aaPredicted RBP5.28□□□□□ -1.56
VPS53-219ENST00000576019 DAPK2Q9UIK4 370 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 YIPF1Q9Y548 306 aa5.28□□□□□ -1.56
VPS53-219ENST00000576019 THADAQ6YHU6 1953 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 PTPRCP08575 1304 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 PDS5AQ29RF7 1337 aaKnown RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 TLN2Q9Y4G6 2542 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 TRAV18A0A075B6X5 111 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 hDV102S1A0JD36 115 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 GOLGA8OA6NCC3 632 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 NCF1BA6NI72 391 aaPredicted RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 A8MUI8 341 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 NCF1CA8MVU1 366 aaPredicted RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 GOLGA8NF8WBI6 632 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 H0YIV9 168 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 GAPDHSO14556 408 aaPredicted RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 NME2P1O60361 137 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 B4GALT2O60909 372 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 RHBDL1O75783 438 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 OR4F21O95013 312 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 PIGNO95427 931 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 IGHEP01854 428 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 CHRNA1P02708 482 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 FGF4P08620 206 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 INSRRP14616 1297 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 SEC61BP60468 96 aaKnown RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 MYBPHQ13203 477 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 KEAP1Q14145 624 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 EFTUD2Q15029 972 aaKnown RBP eCLIP5.27□□□□□ -1.57
VPS53-219ENST00000576019 LINC00303Q3SY05 128 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 ZC2HC1CQ53FD0 456 aaPredicted RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 AGKQ53H12 422 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 LIPKQ5VXJ0 399 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 MIS18BP1Q6P0N0 1132 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 FUT10Q6P4F1 479 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 TTLL10Q6ZVT0 673 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 GPR141Q7Z602 305 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 CHERPQ8IWX8 916 aaKnown RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 LGI2Q8N0V4 545 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 ZNF248Q8NDW4 579 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 TSACCQ96A04 125 aaPredicted RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 PHF21BQ96EK2 531 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 LRFN5Q96NI6 719 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 BTBD9Q96Q07 612 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 GSDMAQ96QA5 445 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 PLIN2Q99541 437 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 NDNQ99608 321 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 CCDC3Q9BQI4 270 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 MRPL13Q9BYD1 178 aaKnown RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 THAP2Q9H0W7 228 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 LRMDAQ9H2I8 198 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 RIOX1Q9H6W3 641 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 RPRD1BQ9NQG5 326 aaKnown RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 TRNAU1APQ9NX07 287 aaKnown RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 MSRB1Q9NZV6 116 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 VPS54Q9P1Q0 977 aa5.27□□□□□ -1.57
VPS53-219ENST00000576019 MTCL1Q9Y4B5 1905 aaKnown RBP5.27□□□□□ -1.57
VPS53-219ENST00000576019 GON4LQ3T8J9 2241 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 GOLGA6L7A0A1B0GV03 622 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 CCDC162PA2VCL2 907 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 OR5K3A6NET4 321 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 ZNF716A6NP11 495 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 NPIPA3F8WFD2 350 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 I6L893 689 aaPredicted RBP5.26□□□□□ -1.57
VPS53-219ENST00000576019 K7ENP7 123 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 PDXKO00764 312 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 MDM4O15151 490 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 CLDN1O95832 211 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 YES1P07947 543 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 ZNF735P0CB33 412 aa5.26□□□□□ -1.57
VPS53-219ENST00000576019 CTSAP10619 480 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms