RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 ICE1Q9Y2F5 2266 aa12.03□□□□□ -0.48
CNOT1-220ENST00000569916 TRGV8A0A0C4DH27 118 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 A1L4Q6 167 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 CYSRT1A8MQ03 144 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 NPIPB8E9PQR5 432 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 AZIN1O14977 448 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 HS6ST1O60243 411 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 NPHS1O60500 1241 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 CHRNGP07510 517 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 GPX3P22352 226 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 PRPH2P23942 346 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 PER3P56645 1201 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 ZNF763Q0D2J5 394 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 MAP4K2Q12851 820 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 HEPACAMQ14CZ8 416 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 EXOSC7Q15024 291 aaKnown RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.02□□□□□ -0.499e-9■□□□□ 9.8
CNOT1-220ENST00000569916 CMPK2Q5EBM0 449 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 KANK2Q63ZY3 851 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 BNC2Q6ZN30 1099 aaPredicted RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 Q6ZPB1 254 aaPredicted RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 RNF165Q6ZSG1 346 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 FGD2Q7Z6J4 655 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 DND1Q8IYX4 353 aaKnown RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 GHDCQ8N2G8 530 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 SIMC1Q8NDZ2 872 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 ADCY4Q8NFM4 1077 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 ADIPOR1Q96A54 375 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 TP53INP1Q96A56 240 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 EXOSC8Q96B26 276 aaKnown RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 CTHRC1Q96CG8 243 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 MAGED4Q96JG8 741 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 FAM173AQ9BQD7 235 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 TUBB1Q9H4B7 451 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 RRAGDQ9NQL2 400 aaPredicted RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 SACM1LQ9NTJ5 587 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 RYDENQ9NUL5 291 aaKnown RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 EHD3Q9NZN3 535 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 SENP1Q9P0U3 644 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 DTX4Q9Y2E6 619 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 FIS1Q9Y3D6 152 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 POLR3HQ9Y535 204 aaPredicted RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 CHCHD2Q9Y6H1 151 aaPredicted RBP12.02□□□□□ -0.49
CNOT1-220ENST00000569916 ZNF780BQ9Y6R6 833 aa12.02□□□□□ -0.49
CNOT1-220ENST00000569916 GTF3C1Q12789 2109 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 TMEM233B4DJY2 109 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 ZNHIT1O43257 154 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 ZG16O60844 167 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 GLSO94925 669 aaPredicted RBP12.01□□□□□ -0.49
CNOT1-220ENST00000569916 CLDN1O95832 211 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 CBX7O95931 251 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 P04436 131 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 TUBBP07437 444 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 CNR1P21554 472 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 ETV4P43268 484 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 DNASE1L1P49184 302 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 NR0B1P51843 470 aaKnown RBP12.01□□□□□ -0.49
CNOT1-220ENST00000569916 KIAA0040Q15053 153 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 CEBPEQ15744 281 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 C3AR1Q16581 482 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 NTRK2Q16620 822 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 TRMT12Q53H54 448 aaKnown RBP12.01□□□□□ -0.49
CNOT1-220ENST00000569916 ZNF628Q5EBL2 1059 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 ARL13AQ5H913 290 aaPredicted RBP12.01□□□□□ -0.49
CNOT1-220ENST00000569916 TMEM64Q6YI46 380 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 GK5Q6ZS86 529 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 ZCCHC23Q6ZST2 131 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 FAM47EQ6ZV65 393 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 SPPL2CQ8IUH8 684 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 TAGAPQ8N103 731 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 C17orf47Q8NEP4 570 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 OR10G3Q8NGC4 313 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 OR52N2Q8NGI0 321 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 OR2T11Q8NH01 316 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 CDC26Q8NHZ8 85 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 FAM76AQ8TAV0 307 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 ZNF675Q8TD23 568 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 PAQR8Q8TEZ7 354 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 TTTY12Q9BZ98 90 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 MYNNQ9NPC7 610 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 PLSCR2Q9NRY7 297 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 SH3BGRL2Q9UJC5 107 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 TINAGQ9UJW2 476 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 DNAJC15Q9Y5T4 150 aa12.01□□□□□ -0.49
CNOT1-220ENST00000569916 NCOA6Q14686 2063 aaPredicted RBP12.01□□□□□ -0.49
CNOT1-220ENST00000569916 FAM166BA8MTA8 275 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 ACOT7O00154 380 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 SLC28A1O00337 649 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 CCL21O00585 134 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 RGS16O15492 202 aaPredicted RBP12□□□□□ -0.49
CNOT1-220ENST00000569916 BPGMP07738 259 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 NEFHP12036 1026 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 PCSK2P16519 638 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 DDCP20711 480 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 ARRB2P32121 409 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 PIGAP37287 484 aa12□□□□□ -0.49
CNOT1-220ENST00000569916 PPIAP62937 165 aaKnown RBP12□□□□□ -0.49
CNOT1-220ENST00000569916 MRPS35P82673 323 aaKnown RBP12□□□□□ -0.49
CNOT1-220ENST00000569916 PLGLB1Q02325 96 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms