RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FAM180BQ6P0A1 224 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 IGFL3Q6UXB1 125 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 GALNT12Q8IXK2 581 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 LRRC25Q8N386 305 aaPredicted RBP16.04■□□□□ 0.16
CLN3-217ENST00000565354 OR1N1Q8NGS0 311 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 PIWIL2Q8TC59 973 aaKnown RBP16.04■□□□□ 0.16
CLN3-217ENST00000565354 DOK4Q8TEW6 326 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 CKAP2Q8WWK9 683 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 FCRL1Q96LA6 429 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 MAGEB18Q96M61 343 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 AKTIPQ9H8T0 292 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 NOP53Q9NZM5 478 aaKnown RBP16.04■□□□□ 0.16
CLN3-217ENST00000565354 EHD3Q9NZN3 535 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 ERVK-19Q9WJR5 959 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 COPG1Q9Y678 874 aaKnown RBP16.04■□□□□ 0.16
CLN3-217ENST00000565354 CSMD2Q7Z408 3487 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 ZFHX3Q15911 3703 aa16.04■□□□□ 0.16
CLN3-217ENST00000565354 A0A1W2PS29 197 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 DYTNA2CJ06 578 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 DYNC1I1O14576 645 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 ZFAND5O76080 213 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 BCKDHAP12694 445 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 LBPP18428 481 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 GALNSP34059 522 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 HPCAL1P37235 193 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 ARG2P78540 354 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 SPRED3Q2MJR0 410 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 SMU1Q2TAY7 513 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 NXNQ6DKJ4 435 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 HSDL2Q6YN16 418 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 DGAT2L6Q6ZPD8 337 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 RPS19BP1Q86WX3 136 aaKnown RBP16.03■□□□□ 0.16
CLN3-217ENST00000565354 WDR75Q8IWA0 830 aaKnown RBP16.03■□□□□ 0.16
CLN3-217ENST00000565354 APCDD1LQ8NCL9 501 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 THAP3Q8WTV1 239 aaPredicted RBP16.03■□□□□ 0.16
CLN3-217ENST00000565354 PSMF1Q92530 271 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 SENP5Q96HI0 755 aaPredicted RBP16.03■□□□□ 0.16
CLN3-217ENST00000565354 EGLN2Q96KS0 407 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 C7orf26Q96N11 449 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 LMF1Q96S06 567 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 CDCP1Q9H5V8 836 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 MEAF6Q9HAF1 191 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 SLC35C2Q9NQQ7 365 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 STMN3Q9NZ72 180 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 BAIAP2L1Q9UHR4 511 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 PPIEQ9UNP9 301 aaKnown RBP16.03■□□□□ 0.16
CLN3-217ENST00000565354 ITPR3Q14573 2671 aa16.03■□□□□ 0.16
CLN3-217ENST00000565354 DOCK10Q96BY6 2186 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 FCHO1O14526 889 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 MPIP34949 423 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 SOX11P35716 441 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 RPL3P39023 403 aaKnown RBP16.02■□□□□ 0.16
CLN3-217ENST00000565354 EMX2Q04743 252 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 ACER2Q5QJU3 275 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 RNF111Q6ZNA4 994 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 FAM47EQ6ZV65 393 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 R3HCC1LQ7Z5L2 792 aaKnown RBP16.02■□□□□ 0.16
CLN3-217ENST00000565354 CCDC116Q8IYX3 515 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 ST6GALNAC3Q8NDV1 305 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 OR5L2Q8NGL0 311 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 ZNF721Q8TF20 911 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 PPCDCQ96CD2 204 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 CNRIP1Q96F85 164 aaPredicted RBP16.02■□□□□ 0.16
CLN3-217ENST00000565354 FBXL20Q96IG2 436 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 REEP4Q9H6H4 257 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 SH3BP4Q9P0V3 963 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 NTNG1Q9Y2I2 539 aa16.02■□□□□ 0.16
CLN3-217ENST00000565354 AKAP9Q99996 3911 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 HIVEP1P15822 2718 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 CCDC168Q8NDH2 2452 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 GOLGA8QA0A0J9YX86 632 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 GOLGA8OA6NCC3 632 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 GOLGA8NF8WBI6 632 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 ATP1B1P05026 303 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 GRNP28799 593 aaKnown RBP16.01■□□□□ 0.15
CLN3-217ENST00000565354 PER3P56645 1201 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 H3F3CQ6NXT2 135 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 SLC29A4Q7RTT9 530 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 FAM9CQ8IZT9 166 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 BEST3Q8N1M1 668 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 VWA5B2Q8N398 1253 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 ZNF321PQ8N8H1 164 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLN3-217ENST00000565354 PRPF18Q99633 342 aaKnown RBP16.01■□□□□ 0.15
CLN3-217ENST00000565354 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLN3-217ENST00000565354 CXorf21Q9HAI6 301 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 ZBTB20Q9HC78 741 aaPredicted RBP16.01■□□□□ 0.15
CLN3-217ENST00000565354 SLCO1B3Q9NPD5 702 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 PLA2G3Q9NZ20 509 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 BCAP29Q9UHQ4 241 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 PCDHGA10Q9Y5H3 936 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 USH1CQ9Y6N9 552 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 TACC2O95359 2948 aa16.01■□□□□ 0.15
CLN3-217ENST00000565354 SDHDO14521 159 aa16■□□□□ 0.15
CLN3-217ENST00000565354 PDPK1O15530 556 aa16■□□□□ 0.15
CLN3-217ENST00000565354 DIAPH2O60879 1101 aa16■□□□□ 0.15
CLN3-217ENST00000565354 F10P00742 488 aa16■□□□□ 0.15
CLN3-217ENST00000565354 EPHA3P29320 983 aa16■□□□□ 0.15
CLN3-217ENST00000565354 GPR143P51810 404 aa16■□□□□ 0.15
CLN3-217ENST00000565354 NCBP2P52298 156 aaKnown RBP eCLIP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms