RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NPFFR2Q9Y5X5 522 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 NCKAP5O14513 1909 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 NIPBLQ6KC79 2804 aaeCLIP15.69■□□□□ 0.1
CLN3-216ENST00000565316 NINQ8N4C6 2090 aa15.69■□□□□ 0.1
CLN3-216ENST00000565316 CTAG2O75638 210 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 EPPINO95925 133 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 HPNP05981 417 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 KLK1P06870 262 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 RBP1P09455 135 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 GDF1P27539 372 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 CEACAM8P31997 349 aaPredicted RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 PHBP35232 272 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 CDK9P50750 372 aaKnown RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 XKP51811 444 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 CRYZQ08257 329 aaKnown RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 TRAF3Q13114 568 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 DUSP8Q13202 625 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 GGTA1PQ4G0N0 100 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 ACSF3Q4G176 576 aaPredicted RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 UBAP2Q5T6F2 1119 aaKnown RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 BICRALQ6AI39 1079 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 WDR53Q7Z5U6 358 aaPredicted RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 METTL4Q8N3J2 472 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 C17orf53Q8N3J3 647 aaPredicted RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 SLC44A1Q8WWI5 657 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 ATP6V1E2Q96A05 226 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 PHF21BQ96EK2 531 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 RILPQ96NA2 401 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 TIMP4Q99727 224 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 ZBTB26Q9HCK0 441 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 AHSPQ9NZD4 102 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 CES1P1Q9UKY3 287 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 AKAP6Q13023 2319 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 FAM221AA4D161 298 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 CPMP14384 443 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 PORP16435 677 aaPredicted RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 TIMP3P35625 211 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 PEX19P40855 299 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 TMED10P49755 219 aaKnown RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 ART1P52961 327 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 MGAT2Q10469 447 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 FBXL19-AS1Q494R0 122 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 NHSL2Q5HYW2 709 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 HLA-DQA1Q5Y7H0 255 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 POMZP3Q6PJE2 187 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 PAGE2Q7Z2X7 111 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 RELL2Q8NC24 303 aaPredicted RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 TRPC4APQ8TEL6 797 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 NSUN5Q96P11 429 aaKnown RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 LRRC1Q9BTT6 524 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 MRPL1Q9BYD6 325 aaKnown RBP15.68■□□□□ 0.1
CLN3-216ENST00000565316 PRDM14Q9GZV8 571 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 C15orf41Q9Y2V0 281 aa15.68■□□□□ 0.1
CLN3-216ENST00000565316 C15orf38-AP3S2A0A0A6YYH1 394 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 KDM4EB2RXH2 506 aaPredicted RBP15.67■□□□□ 0.1
CLN3-216ENST00000565316 ABCB1P08183 1280 aaPredicted RBP15.67■□□□□ 0.1
CLN3-216ENST00000565316 COL6A2P12110 1019 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 NAGAP17050 411 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 CASP3P42574 277 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 NRG3P56975 720 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 RPP38P78345 283 aaKnown RBP15.67■□□□□ 0.1
CLN3-216ENST00000565316 IFT88Q13099 833 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 CCNYL2Q5T2Q4 361 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 VASNQ6EMK4 673 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 C8orf74Q6P047 294 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 PACS2Q86VP3 889 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 LACC1Q8IV20 430 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 ZZZ3Q8IYH5 903 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 NAXEQ8NCW5 288 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 TNIP2Q8NFZ5 429 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 NRGNQ92686 78 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 TMEM41AQ96HV5 264 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 GNRHR2Q96P88 292 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 SH3GL2Q99962 352 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 DNAJB12Q9NXW2 375 aaKnown RBP15.67■□□□□ 0.1
CLN3-216ENST00000565316 XPR1Q9UBH6 696 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 ZNF629Q9UEG4 869 aaPredicted RBP15.67■□□□□ 0.1
CLN3-216ENST00000565316 PCDHA9Q9Y5H5 950 aa15.67■□□□□ 0.1
CLN3-216ENST00000565316 DVL2O14641 736 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 SMIM24O75264 130 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 TRAPPC6AO75865 159 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 ACSL3O95573 720 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 RPS17P08708 135 aaKnown RBP15.66■□□□□ 0.1
CLN3-216ENST00000565316 GPX3P22352 226 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 ABCD3P28288 659 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 ARL1P40616 181 aaPredicted RBP15.66■□□□□ 0.1
CLN3-216ENST00000565316 KIR2DL3P43628 341 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 ASCL1P50553 236 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 IST1P53990 364 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 MAP4K2Q12851 820 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 TSNAXIP1Q2TAA8 658 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 TIGD3Q6B0B8 471 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 TTC19Q6DKK2 380 aaPredicted RBP15.66■□□□□ 0.1
CLN3-216ENST00000565316 SLC48A1Q6P1K1 146 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 TMEM81Q6P7N7 255 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 COMMD6Q7Z4G1 85 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 MILR1Q7Z6M3 343 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 PM20D2Q8IYS1 436 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 NINJ1Q92982 152 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 C1QTNF3Q9BXJ4 246 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms