RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CCNYL3P0C7X3 344 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 MYL12AP19105 171 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 SOX18P35713 384 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 GIPRP48546 466 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 SLC9A3P48764 834 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 MAP4K2Q12851 820 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 P2RY14Q15391 338 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 NLGN4YQ8NFZ3 816 aaPredicted RBP12.49□□□□□ -0.41
CLN3-210ENST00000563874 RAET1EQ8TD07 263 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 PMM1Q92871 262 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 MTERF3Q96E29 417 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 MSLNLQ96KJ4 702 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 ZNF558Q96NG5 402 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 DCLRE1CQ96SD1 692 aaKnown RBP12.49□□□□□ -0.41
CLN3-210ENST00000563874 A4GALTQ9NPC4 353 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 DIMT1Q9UNQ2 313 aaKnown RBP12.49□□□□□ -0.41
CLN3-210ENST00000563874 KPNA3O00505 521 aaPredicted RBP12.49□□□□□ -0.41
CLN3-210ENST00000563874 LRG1P02750 347 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 ALPPL2P10696 532 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 CPEP16870 476 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 DDCP20711 480 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 IRS1P35568 1242 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 CAMK2BQ13554 666 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 QPRTQ15274 297 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 OCLNQ16625 522 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 TATDN3Q17R31 274 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 CLEC12AQ5QGZ9 265 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 C11orf96Q7Z7L8 435 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 LHFPL3Q86UP9 236 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 LRRC56Q8IYG6 542 aaPredicted RBP12.49□□□□□ -0.41
CLN3-210ENST00000563874 SLC39A11Q8N1S5 342 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 YIPF7Q8N8F6 280 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 SIMC1Q8NDZ2 872 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 WDR34Q96EX3 536 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 TEFMQ96QE5 360 aaKnown RBP12.49□□□□□ -0.41
CLN3-210ENST00000563874 FNDC11Q9BVV2 318 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 ZMAT5Q9UDW3 170 aaKnown RBP12.49□□□□□ -0.41
CLN3-210ENST00000563874 ABT1Q9ULW3 272 aaKnown RBP12.49□□□□□ -0.41
CLN3-210ENST00000563874 ASF1AQ9Y294 204 aa12.49□□□□□ -0.41
CLN3-210ENST00000563874 SMLR1H3BR10 107 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 B3GALNT1O75752 331 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 STATHP02808 62 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 PRKAG1P54619 331 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 WNT4P56705 351 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 SNRPD2P62316 118 aaKnown RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 FABP5Q01469 135 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 MLLT1Q03111 559 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 PRAMEF14Q5SWL7 426 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 PRAMEF13Q5VWM6 474 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 PLET1Q6UQ28 207 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 CLDN22Q8N7P3 220 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 OR5AR1Q8NGP9 310 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 TM4SF18Q96CE8 201 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 QRSL1Q9H0R6 528 aaKnown RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 ANKRA2Q9H9E1 313 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 SIRT3Q9NTG7 399 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 CUEDC1Q9NWM3 386 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 TEX10Q9NXF1 929 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 FBXW2Q9UKT8 454 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 CASKO14936 926 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 PPM1DO15297 605 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 HPGDSO60760 199 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 MMP20O60882 483 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 NR2F6P10588 404 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 NR2F1P10589 423 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 SLC2A2P11168 524 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 RAB25P57735 213 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 SP3Q02447 781 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 YIF1BQ5BJH7 314 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 LY6G5CQ5SRR4 150 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 CNIH2Q6PI25 160 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 SLC30A8Q8IWU4 369 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 Q8N402 240 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 FAM26EQ8N5C1 309 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 AMER3Q8N944 861 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 GDPD1Q8N9F7 314 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 FAM181AQ8N9Y4 354 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 OR6T1Q8NGN1 323 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 JPH3Q8WXH2 748 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 SMPDL3AQ92484 453 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 TCEAL4Q96EI5 215 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 RNFT2Q96EX2 444 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 GFM1Q96RP9 751 aaKnown RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 HDHD5Q9BXW7 423 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 ZNF717Q9BY31 904 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 POLDIP3Q9BY77 421 aaKnown RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 MCOLN1Q9GZU1 580 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 NLKQ9UBE8 527 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 TESQ9UGI8 421 aaKnown RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 TAC3Q9UHF0 121 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 ICKQ9UPZ9 632 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 PCYT1BQ9Y5K3 369 aaPredicted RBP12.48□□□□□ -0.41
CLN3-210ENST00000563874 GLOD5A6NK44 160 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 WASH3PC4AMC7 463 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 CCL16O15467 120 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 CH25HO95992 272 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 INHAP05111 366 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 PSMB5P28074 263 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 MMP12P39900 470 aa12.48□□□□□ -0.41
CLN3-210ENST00000563874 TM4SF4P48230 202 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms