RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 KLHL14Q9P2G3 628 aa20.24■□□□□ 0.83
SNX1-210ENST00000560260 PCDHGA9Q9Y5G4 932 aaKnown RBP20.24■□□□□ 0.83
SNX1-210ENST00000560260 ERVH48-1M5A8F1 160 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 DYRK3O43781 588 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 SCN2BO60939 215 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 NME6O75414 186 aaPredicted RBP20.23■□□□□ 0.83
SNX1-210ENST00000560260 MC3RP41968 323 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 DGKQP52824 942 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 CLNS1AP54105 237 aaKnown RBP20.23■□□□□ 0.83
SNX1-210ENST00000560260 PGS1Q32NB8 556 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 FAM174BQ3ZCQ3 159 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 TMEM107Q6UX40 140 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 C16orf47Q6ZP98 133 aaPredicted RBP20.23■□□□□ 0.83
SNX1-210ENST00000560260 THAP3Q8WTV1 239 aaPredicted RBP20.23■□□□□ 0.83
SNX1-210ENST00000560260 ART5Q96L15 291 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 RILPQ96NA2 401 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 SMAD5Q99717 465 aaKnown RBP20.23■□□□□ 0.83
SNX1-210ENST00000560260 ARHGAP9Q9BRR9 750 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 LIN28AQ9H9Z2 209 aaKnown RBP20.23■□□□□ 0.83
SNX1-210ENST00000560260 COPS7AQ9UBW8 275 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 DTX4Q9Y2E6 619 aa20.23■□□□□ 0.83
SNX1-210ENST00000560260 A8MUI8 341 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 MKRN2OSH3BPM6 223 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 ST13P50502 369 aaKnown RBP20.22■□□□□ 0.83
SNX1-210ENST00000560260 EBPQ15125 230 aaKnown RBP20.22■□□□□ 0.83
SNX1-210ENST00000560260 RPS6KA2Q15349 733 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 C6orf163Q5TEZ5 329 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 HSDL2Q6YN16 418 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 RNF111Q6ZNA4 994 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 CLECL1Q8IZS7 167 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 MIER2Q8N344 545 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 OR52R1Q8NGF1 315 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 OR8J2Q8NGG1 315 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 ZBED6CLQ96FA7 236 aaPredicted RBP20.22■□□□□ 0.83
SNX1-210ENST00000560260 PRPF18Q99633 342 aaKnown RBP20.22■□□□□ 0.83
SNX1-210ENST00000560260 DEFB126Q9BYW3 111 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 TRIM4Q9C037 500 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 FAM107BQ9H098 131 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 RABEP2Q9H5N1 569 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 SIRT3Q9NTG7 399 aaPredicted RBP20.22■□□□□ 0.83
SNX1-210ENST00000560260 ATAD3AQ9NVI7 634 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 MAPRE3Q9UPY8 281 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 ERVK-11Q9UQG0 969 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 TP53TG5Q9Y2B4 290 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 BOD1L1Q8NFC6 3051 aa20.22■□□□□ 0.83
SNX1-210ENST00000560260 A0A1W2PRB8 838 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 GMNCA6NCL1 334 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 PLOD3O60568 738 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 SLC22A3O75751 556 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 C6orf47O95873 294 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 KIR3DL1P43629 444 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 ATP4BP51164 291 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 AP2B1P63010 937 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 RNF4P78317 190 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 SRSF11Q05519 484 aaKnown RBP20.21■□□□□ 0.83
SNX1-210ENST00000560260 MLC1Q15049 377 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 CRB2Q5IJ48 1285 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 IRAK1BP1Q5VVH5 260 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 TCTN3Q6NUS6 607 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 LINC00696Q6ZRV3 163 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 FUNDC1Q8IVP5 155 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 ARMC10Q8N2F6 343 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 OR7G1Q8NGA0 311 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 ZFP28Q8NHY6 868 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 ELP4Q96EB1 424 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 OR10A5Q9H207 317 aa20.21■□□□□ 0.83
SNX1-210ENST00000560260 PLOD2O00469 737 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 ZNF354AO60765 605 aaPredicted RBP20.2■□□□□ 0.82
SNX1-210ENST00000560260 ZFAND5O76080 213 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 PSMG1O95456 288 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 DDX5P17844 614 aaKnown RBP20.2■□□□□ 0.82
SNX1-210ENST00000560260 MANFP55145 182 aaKnown RBP20.2■□□□□ 0.82
SNX1-210ENST00000560260 STX1BP61266 288 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 LY6DQ14210 128 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 SQLEQ14534 574 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 DPY19L1Q2PZI1 675 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 AGAP7PQ5VUJ5 663 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 ANKRD46Q86W74 232 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 SLC5A8Q8N695 610 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 OR8K3Q8NH51 312 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 C16orf52Q8NHV5 167 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 OR5P2Q8WZ92 322 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 AGAP4Q96P64 663 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 ELAC2Q9BQ52 826 aaKnown RBP20.2■□□□□ 0.82
SNX1-210ENST00000560260 ADNPQ9H2P0 1102 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 CDCP1Q9H5V8 836 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 BCAP29Q9UHQ4 241 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 TUBD1Q9UJT1 453 aa20.2■□□□□ 0.82
SNX1-210ENST00000560260 PIEZO2Q9H5I5 2752 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 A0A087WV62 115 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 UPK1AO00322 258 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 NCF2P19878 526 aaPredicted RBP20.19■□□□□ 0.82
SNX1-210ENST00000560260 S100A3P33764 101 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 GPC1P35052 558 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 CD97P48960 835 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 EMDP50402 254 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 MLF1P58340 268 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 MFAP5Q13361 173 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 ACER2Q5QJU3 275 aa20.19■□□□□ 0.82
SNX1-210ENST00000560260 IGFL2Q6UWQ7 119 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms