RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 A0A0A6YYD5 115 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 MBD3L4A6NDZ8 208 aaPredicted RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 MBD3L3A6NE82 208 aaPredicted RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 MBD3L5A6NJ08 208 aaPredicted RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 WASHC1A8K0Z3 465 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 CASKO14936 926 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 TMPRSS11DO60235 418 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 GUCY1B2O75343 617 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 EEDO75530 441 aaKnown RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 PRKRAO75569 313 aaKnown RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 LRATO95237 230 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ACTL6AO96019 429 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 GFAPP14136 432 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 NAGAP17050 411 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 BMP7P18075 431 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 SSTR4P31391 388 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 STX2P32856 288 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 BSGP35613 385 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 CASP3P42574 277 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ZNF136P52737 540 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ALDH18A1P54886 795 aaKnown RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 FUT7Q11130 342 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 SLMAPQ14BN4 828 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ACAP2Q15057 778 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 CPSF6Q16630 551 aaKnown RBP eCLIP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 PFKFB4Q16877 469 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 DEFB113Q30KQ7 82 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 KBTBD12Q3ZCT8 623 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 TIGD3Q6B0B8 471 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 OR52E8Q6IFG1 317 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 METTL2BQ6P1Q9 378 aaKnown RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 KLC3Q6P597 504 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 SCIMPQ6UWF3 145 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 PAMR1Q6UXH9 720 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 TMEM64Q6YI46 380 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 NUP54Q7Z3B4 507 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 BIVMQ86UB2 503 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 NUDT13Q86X67 352 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 RNF175Q8N4F7 328 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ZNF441Q8N8Z8 693 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 C17orf47Q8NEP4 570 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 OR1J4Q8NGS1 313 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 MBD3L2Q8NHZ7 208 aaPredicted RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 LINC01560Q8TB33 94 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ZPLD1Q8TCW7 415 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ATP6V1E2Q96A05 226 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 NXNL1Q96CM4 212 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 DTNBP1Q96EV8 351 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 TMEM41AQ96HV5 264 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ZFP3Q96NJ6 502 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 SERPINI1Q99574 410 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 OR10A5Q9H207 317 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 DPH5Q9H2P9 285 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 UBQLN3Q9H347 655 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 ACBD3Q9H3P7 528 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 GSX1Q9H4S2 264 aaPredicted RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 IPPKQ9H8X2 491 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 CXorf21Q9HAI6 301 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 RPH3AQ9Y2J0 694 aaPredicted RBP8.39□□□□□ -1.07
HDDC3-204ENST00000559834 C15orf41Q9Y2V0 281 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 SLC6A5Q9Y345 797 aa8.39□□□□□ -1.07
HDDC3-204ENST00000559834 EEF1E1-BLOC1S5C9J1V9 151 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 PGRMC2O15173 223 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 EEF1E1O43324 174 aaKnown RBP8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ERN1O75460 977 aaKnown RBP8.38□□□□□ -1.07
HDDC3-204ENST00000559834 SEMA3DO95025 777 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ATE1O95260 518 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 CLDN9O95484 217 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 AIFM1O95831 613 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 CLPSP04118 112 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 CYP4B1P13584 511 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 MTHFD2P13995 350 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 NT5EP21589 574 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ARL1P40616 181 aaPredicted RBP8.38□□□□□ -1.07
HDDC3-204ENST00000559834 XKP51811 444 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 NEK2P51955 445 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 AGFG1P52594 562 aaKnown RBP8.38□□□□□ -1.07
HDDC3-204ENST00000559834 WNT3P56703 355 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 GPX6P59796 221 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 CAV1Q03135 178 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 DLG1Q12959 904 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 SNTA1Q13424 505 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 NAB1Q13506 487 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 GTF2H2Q13888 395 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 PCBP2Q15366 365 aaKnown RBP eCLIP8.38□□□□□ -1.07
HDDC3-204ENST00000559834 EIPR1Q53HC9 387 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 C10orf62Q5T681 223 aaPredicted RBP8.38□□□□□ -1.07
HDDC3-204ENST00000559834 FNDC7Q5VTL7 733 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 SLC30A6Q6NXT4 461 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 GTF2H2CQ6P1K8 395 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 POMZP3Q6PJE2 187 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ENPP6Q6UWR7 440 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 PAGE2Q7Z2X7 111 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 CMC1Q7Z7K0 106 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 MMP21Q8N119 569 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ZNF615Q8N8J6 731 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 L3MBTL4Q8NA19 623 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ISL2Q96A47 359 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ADIPOR1Q96A54 375 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 WDYHV1Q96HA8 205 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms