RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NAGLUP54802 743 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 ZNF750Q32MQ0 723 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 LIPMQ5VYY2 423 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 MYO7BQ6PIF6 2116 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 PAOXQ6QHF9 649 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 DOLPP1Q86YN1 238 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 CCNYL1Q8N7R7 359 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 FAM57AQ8TBR7 257 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 CAVIN3Q969G5 261 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 NTNG2Q96CW9 530 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 CNRIP1Q96F85 164 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 GAL3ST4Q96RP7 486 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 DMRTA2Q96SC8 542 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 ROPN1BQ9BZX4 212 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 OR10A5Q9H207 317 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 ROPN1Q9HAT0 212 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 MID1IP1Q9NPA3 183 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 QPCTLQ9NXS2 382 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 MAT2BQ9NZL9 334 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 ENTPD4Q9Y227 616 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 TEX15Q9BXT5 2789 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 ITPR2Q14571 2701 aa14.79□□□□□ -0.04
CCDC88C-209ENST00000554872 FOXO6A8MYZ6 492 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 ADAM10O14672 748 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 NAGAP17050 411 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 NT5EP21589 574 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 PRPH2P23942 346 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 PTGS2P35354 604 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 DEKP35659 375 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 SOX18P35713 384 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 RFC3P40938 356 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 SMSP52788 366 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 PPIAP62937 165 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 ADORA2A-AS1P86434 159 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 HSF1Q00613 529 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 HEPACAMQ14CZ8 416 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 RPS6KA2Q15349 733 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 TMEM81Q6P7N7 255 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 FAM47EQ6ZV65 393 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 TRABD2AQ86V40 505 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 MMP21Q8N119 569 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 LRRC25Q8N386 305 aaPredicted RBP14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 MREGQ8N565 214 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 OR52N2Q8NGI0 321 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 KLHL29Q96CT2 875 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 APOPT1Q96IL0 206 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 KCNA7Q96RP8 456 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 TMEM109Q9BVC6 243 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 HEY2Q9UBP5 337 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 CNOT11Q9UKZ1 510 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 PLLPQ9Y342 182 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 TIMM22Q9Y584 194 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 ZNF780BQ9Y6R6 833 aa14.78□□□□□ -0.04
CCDC88C-209ENST00000554872 GTF3C1Q12789 2109 aa14.77□□□□□ -0.04
CCDC88C-209ENST00000554872 A0A1B0GTH9 108 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 SUSD5O60279 629 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 RSL1D1O76021 490 aaKnown RBP14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 UROSP10746 265 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 GPX3P22352 226 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 FOXA1P55317 472 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 NRG3P56975 720 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 DCAF7P61962 342 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 PSPHP78330 225 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 HMGCS1Q01581 520 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 PLGLB1Q02325 96 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 CFAP157Q5JU67 520 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 FAM219BQ5XKK7 198 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 HIST2H2BCQ6DN03 193 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 MRGPRGQ86SM5 289 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 TMEM251Q8N6I4 163 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 BANPQ8N9N5 519 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 APIPQ96GX9 242 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 PHF12Q96QT6 1004 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 ZNF703Q9H7S9 590 aaPredicted RBP14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 PROK2Q9HC23 129 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 TAS2R7Q9NYW3 318 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 UTS2RQ9UKP6 389 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 BOKQ9UMX3 212 aaPredicted RBP14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 DLGAP4Q9Y2H0 992 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 CCL27Q9Y4X3 112 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 NPFFR2Q9Y5X5 522 aa14.77□□□□□ -0.05
CCDC88C-209ENST00000554872 NOTCH2Q04721 2471 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 GNG14A0A1W2PPG7 69 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 SMIM23A6NLE4 172 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 TP53I11O14683 189 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 ACOX3O15254 700 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 BCAS2O75934 225 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 SLITRK5O94991 958 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 SLU7O95391 586 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 CBX7O95931 251 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 IL3P08700 152 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 IFI6P09912 130 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 ESRRAP11474 423 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 NR0B1P51843 470 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 DUSP2Q05923 314 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 ZNF763Q0D2J5 394 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 PCLAFQ15004 111 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 ZNF630Q2M218 657 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 HLA-DQA1Q5Y7H0 255 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms