RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 RDH11Q8TC12 318 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 PAQR8Q8TEZ7 354 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 ZNF483Q8TF39 744 aaPredicted RBP10.91□□□□□ -0.66
CKAP4-202ENST00000552828 SENP5Q96HI0 755 aaPredicted RBP10.91□□□□□ -0.66
CKAP4-202ENST00000552828 APOPT1Q96IL0 206 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 NSUN5Q96P11 429 aaKnown RBP10.91□□□□□ -0.66
CKAP4-202ENST00000552828 ZIM3Q96PE6 472 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 MAPKAP1Q9BPZ7 522 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 NTMT1Q9BV86 223 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 CNPPD1Q9BV87 410 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 MS4A8Q9BY19 250 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 ZNF703Q9H7S9 590 aaPredicted RBP10.91□□□□□ -0.66
CKAP4-202ENST00000552828 ZFP64Q9NPA5 681 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 ACKR4Q9NPB9 350 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 RASSF1Q9NS23 344 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 CCM2LQ9NUG4 571 aaPredicted RBP10.91□□□□□ -0.66
CKAP4-202ENST00000552828 ZNF446Q9NWS9 450 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 MKS1Q9NXB0 559 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 QPCTLQ9NXS2 382 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 SENP1Q9P0U3 644 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 SPRR3Q9UBC9 169 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 COPS7AQ9UBW8 275 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 ST6GALNAC2Q9UJ37 374 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 MID2Q9UJV3 735 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 PLLPQ9Y342 182 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 RNF11Q9Y3C5 154 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 PCDHGA11Q9Y5H2 935 aa10.91□□□□□ -0.66
CKAP4-202ENST00000552828 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.91□□□□□ -0.66
CKAP4-202ENST00000552828 DNHD1Q96M86 4753 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 FLNAP21333 2647 aaKnown RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 PRRC2AP48634 2157 aaKnown RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 G3V2L1 256 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 H0YIV9 168 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 OTCP00480 354 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 RFPL3SP0C7P2 107 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 CPA3P15088 417 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 HIST1H1TP22492 207 aaPredicted RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 PIGAP37287 484 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 PIK3CBP42338 1070 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 KIR2DL3P43628 341 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 CDH13P55290 713 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 NAA20P61599 178 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 PHEXP78562 749 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 CLCQ05315 142 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 ASPHQ12797 758 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 CPSF6Q16630 551 aaKnown RBP eCLIP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 UNC50Q53HI1 259 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 SEM1Q6ZVN7 128 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 CHSY3Q70JA7 882 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 C9orf40Q8IXQ3 194 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 ZZZ3Q8IYH5 903 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 DND1Q8IYX4 353 aaKnown RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 LRRC25Q8N386 305 aaPredicted RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 FBXW8Q8N3Y1 598 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 OR52B6Q8NGF0 335 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 HUS1BQ8NHY5 278 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 TRPC4APQ8TEL6 797 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 ZNF473Q8WTR7 871 aaKnown RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 SREK1Q8WXA9 508 aaKnown RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 SPACA9Q96E40 222 aaPredicted RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 L3HYPDHQ96EM0 354 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 CDK15Q96Q40 435 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 TMEM237Q96Q45 408 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 POLDIP3Q9BY77 421 aaKnown RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 CLEC4MQ9H2X3 399 aaPredicted RBP10.9□□□□□ -0.66
CKAP4-202ENST00000552828 CENPHQ9H3R5 247 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 LDAHQ9H6V9 325 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 PROK2Q9HC23 129 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 ZBTB26Q9HCK0 441 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 DLL4Q9NR61 685 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 TSC22D4Q9Y3Q8 395 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 SPACA6W5XKT8 324 aa10.9□□□□□ -0.66
CKAP4-202ENST00000552828 AKAP6Q13023 2319 aa10.9□□□□□ -0.67
CKAP4-202ENST00000552828 LRRC3CA6NJW4 275 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 HSPB2A8KAH6 182 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 RTCAO00442 366 aaKnown RBP10.89□□□□□ -0.67
CKAP4-202ENST00000552828 PROM1O43490 865 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 FGF17O60258 216 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 SPAG7O75391 227 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 FBXO45P0C2W1 286 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 MYZAPP0CAP1 466 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 COX7A2P14406 83 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 TSPAN8P19075 237 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 KLK2P20151 261 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 DNAJB13P59910 316 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 ID2Q02363 134 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 TRAF3Q13114 568 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 DDX39BQ13838 428 aaKnown RBP10.89□□□□□ -0.67
CKAP4-202ENST00000552828 HSPB2Q16082 182 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 AP5B1Q2VPB7 878 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 FBXL19-AS1Q494R0 122 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 CFAP157Q5JU67 520 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 C10orf62Q5T681 223 aaPredicted RBP10.89□□□□□ -0.67
CKAP4-202ENST00000552828 TTC19Q6DKK2 380 aaPredicted RBP10.89□□□□□ -0.67
CKAP4-202ENST00000552828 RPS27LQ71UM5 84 aaKnown RBP10.89□□□□□ -0.67
CKAP4-202ENST00000552828 ULK2Q8IYT8 1036 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 CCNYL1Q8N7R7 359 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 OR4F6Q8NGB9 312 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 NEIL3Q8TAT5 605 aa10.89□□□□□ -0.67
CKAP4-202ENST00000552828 SLC22A8Q8TCC7 542 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms