RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 TNFSF13O75888 250 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 TGFB1P01137 390 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 PTMSP20962 102 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 CRYGSP22914 178 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 SSR2P43308 183 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 SLAMF1Q13291 335 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 GAB1Q13480 694 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 CAPRIN1Q14444 709 aaKnown RBP11.58□□□□□ -0.56
SCAF11-208ENST00000546534 SPRED3Q2MJR0 410 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 C18orf63Q68DL7 685 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 ADAMTSL2Q86TH1 951 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 PPIL6Q8IXY8 311 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 SNX31Q8N9S9 440 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 PLPP7Q8NBV4 271 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 ZNF473Q8WTR7 871 aaKnown RBP11.58□□□□□ -0.56
SCAF11-208ENST00000546534 ANKRD49Q8WVL7 239 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 TANKQ92844 425 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 MAGOHBQ96A72 148 aaKnown RBP11.58□□□□□ -0.56
SCAF11-208ENST00000546534 WDR34Q96EX3 536 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 TMEM41AQ96HV5 264 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 VPS39Q96JC1 886 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 MARK4Q96L34 752 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 KRT12Q99456 494 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 MED18Q9BUE0 208 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 EFCAB11Q9BUY7 163 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 PHACTR1Q9C0D0 580 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 ACBD3Q9H3P7 528 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 SNX15Q9NRS6 342 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 PGPEP1Q9NXJ5 209 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 CLCF1Q9UBD9 225 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 CHD3Q12873 2000 aaKnown RBP11.58□□□□□ -0.56
SCAF11-208ENST00000546534 MED12Q93074 2177 aa11.58□□□□□ -0.56
SCAF11-208ENST00000546534 A0A1W2PNV4 684 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 LCE2BO14633 110 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 MSTNO14793 375 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 OR10H2O60403 315 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 SMNDC1O75940 238 aaKnown RBP eCLIP11.57□□□□□ -0.56
SCAF11-208ENST00000546534 LOXP28300 417 aaPredicted RBP11.57□□□□□ -0.56
SCAF11-208ENST00000546534 GGT5P36269 586 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 CD79BP40259 229 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 HSPA7P48741 367 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 NR1H2P55055 460 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 PCDH1Q08174 1060 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 TNK1Q13470 666 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 TGFBIQ15582 683 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 HIST2H2ACQ16777 129 aaPredicted RBP11.57□□□□□ -0.56
SCAF11-208ENST00000546534 TMEM35AQ53FP2 167 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 RNASEH2BQ5TBB1 312 aaKnown RBP11.57□□□□□ -0.56
SCAF11-208ENST00000546534 HIST2H2AA3Q6FI13 130 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 OR4C11Q6IEV9 310 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 HEPHL1Q6MZM0 1159 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 PODNL1Q6PEZ8 512 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 TRMT10BQ6PF06 316 aaKnown RBP11.57□□□□□ -0.56
SCAF11-208ENST00000546534 ANGPTL8Q6UXH0 198 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 GPR180Q86V85 440 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 PRR22Q8IZ63 422 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 OR1J4Q8NGS1 313 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 IGFBPL1Q8WX77 278 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 HPS1Q92902 700 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 RIT1Q92963 219 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 TP53INP1Q96A56 240 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 FAM111AQ96PZ2 611 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 PELOQ9BRX2 385 aaKnown RBP11.57□□□□□ -0.56
SCAF11-208ENST00000546534 MS4A12Q9NXJ0 267 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 WWOXQ9NZC7 414 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 PSAT1Q9Y617 370 aa11.57□□□□□ -0.56
SCAF11-208ENST00000546534 GLOD5A6NK44 160 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 STK16O75716 305 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 GPR75O95800 540 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 AVPP01185 164 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 PAX1P15863 534 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 EPORP19235 508 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 TLX1P31314 330 aaPredicted RBP11.56□□□□□ -0.56
SCAF11-208ENST00000546534 SSTR4P31391 388 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 CCKARP32238 428 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 GCKP35557 465 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 CASP2P42575 452 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 PCYT1AP49585 367 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 STARP49675 285 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 TMED10P49755 219 aaKnown RBP11.56□□□□□ -0.56
SCAF11-208ENST00000546534 HNRNPH2P55795 449 aaKnown RBP11.56□□□□□ -0.56
SCAF11-208ENST00000546534 TAS2R39P59534 338 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 EEF1A1P68104 462 aaKnown RBP11.56□□□□□ -0.56
SCAF11-208ENST00000546534 RPP38P78345 283 aaKnown RBP11.56□□□□□ -0.56
SCAF11-208ENST00000546534 TNFRSF17Q02223 184 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 IRF8Q02556 426 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 DMTNQ08495 405 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 CHIT1Q13231 466 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 LAPTM5Q13571 262 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 PDK4Q16654 411 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 PAGE2BQ5JRK9 111 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 EEF1A1P5Q5VTE0 462 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 KHDRBS2Q5VWX1 349 aaKnown RBP11.56□□□□□ -0.56
SCAF11-208ENST00000546534 HLA-DQA1Q5Y7H0 255 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 ENPP6Q6UWR7 440 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 PLEKHM3Q6ZWE6 761 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 TRIM42Q8IWZ5 723 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 MEIOBQ8N635 442 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 MAPK1IP1LQ8NDC0 245 aa11.56□□□□□ -0.56
SCAF11-208ENST00000546534 TMEM158Q8WZ71 300 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms