RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 A0A1W2PR48 441 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 CAPN14A8MX76 684 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 GNB5O14775 395 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 SIAH2O43255 324 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 SERPINB1P30740 379 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 TLX1P31314 330 aaPredicted RBP16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 GALNSP34059 522 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 BUD31P41223 144 aaPredicted RBP16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 SLC12A2P55011 1212 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 DDX39BQ13838 428 aaKnown RBP16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 RCAN2Q14206 197 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 ADGRE4PQ86SQ3 457 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 YRDCQ86U90 279 aaKnown RBP16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 HUS1BQ8NHY5 278 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 EXT2Q93063 718 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 UBXN10Q96LJ8 280 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 Q96MF0 132 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 SFXN3Q9BWM7 321 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 CXorf21Q9HAI6 301 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 NSMCE4AQ9NXX6 385 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 FETUBQ9UGM5 382 aa16.23■□□□□ 0.19
CLSTN3-214ENST00000542663 A0A0A6YYD5 115 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 TMPRSS11DO60235 418 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 EEDO75530 441 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 CT62P0C5K7 136 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 CPN1P15169 458 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 RAP1GDS1P52306 607 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 ARL4CP56559 192 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 ATP6V0D1P61421 351 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 PDIA2Q13087 525 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 TIGD3Q6B0B8 471 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 DESI1Q6ICB0 168 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 GRHL2Q6ISB3 625 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 P3H2Q8IVL5 708 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 PRR22Q8IZ63 422 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 ZNF615Q8N8J6 731 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 MTERF1Q99551 399 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 PIP5K1AQ99755 562 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 G6PC3Q9BUM1 346 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 PRM3Q9NNZ6 103 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 RNF112Q9ULX5 631 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 TESMINQ9Y4I5 508 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 PCNX3Q9H6A9 2034 aa16.22■□□□□ 0.19
CLSTN3-214ENST00000542663 COL6A5A8TX70 2615 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 CXorf49A8MYA2 514 aaPredicted RBP16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 E7ESA3 106 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 SMPD2O60906 423 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 RCBTB2O95199 551 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 ACTL6AO96019 429 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 SLC35E2BP0CK96 405 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 SLC35E2P0CK97 266 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 NR2F6P10588 404 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 CYP4B1P13584 511 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 BSGP35613 385 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 PIK3CBP42338 1070 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 CPA2P48052 419 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 TMED10P49755 219 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 ARFIP1P53367 373 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 FUT7Q11130 342 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 GCNT2Q8N0V5 402 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 OR1J4Q8NGS1 313 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 UBTD2Q8WUN7 234 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 INTS12Q96CB8 462 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 TSPAN17Q96FV3 270 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 ZFP3Q96NJ6 502 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 TM9SF2Q99805 663 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 LYARQ9NX58 379 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 C6orf203Q9P0P8 240 aaPredicted RBP16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 CLCF1Q9UBD9 225 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 ADGRE2Q9UHX3 823 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 ADAM21Q9UKJ8 722 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 DTX4Q9Y2E6 619 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 HIVEP2P31629 2446 aa16.21■□□□□ 0.19
CLSTN3-214ENST00000542663 K7EPI3 171 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 SMAD7O15105 426 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 AIFM1O95831 613 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 S100BP04271 92 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 ABCB1P08183 1280 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 STMN1P16949 149 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 ABCD3P28288 659 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 PTGDSP41222 190 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 RPS13P62277 151 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 DLG1Q12959 904 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 ZKSCAN8Q15776 578 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 HLA-DQA1Q5Y7H0 255 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 ANGPTL8Q6UXH0 198 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 CAPN12Q6ZSI9 719 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 CXXC5Q7LFL8 322 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 SLC35F6Q8N357 371 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 SIMC1Q8NDZ2 872 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 UCN2Q96RP3 112 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 GPR22Q99680 433 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 OR10A5Q9H207 317 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 ALG9Q9H6U8 611 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 DDX31Q9H8H2 851 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 OPTCQ9UBM4 332 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 SNX12Q9UMY4 172 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 EIF3LQ9Y262 564 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 TSC22D4Q9Y3Q8 395 aa16.2■□□□□ 0.18
CLSTN3-214ENST00000542663 ANK3Q12955 4377 aaKnown RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms