RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	TMEM145	Q8NBT3	493 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	GEMIN6	Q8WXD5	167 aa	Known RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	ARMC5	Q96C12	935 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	EQTN	Q9NQ60	294 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	FBXL12	Q9NXK8	326 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	ANGPT4	Q9Y264	503 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	YBX2	Q9Y2T7	364 aa	Known RBP	13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	KCNE3	Q9Y6H6	103 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	ENPP4	Q9Y6X5	453 aa		13.98	□□□□□ -0.17
DDX55-209	ENST00000542286	EPOP	A6NHQ4	379 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286		H0Y8X5	98 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CAPN5	O15484	640 aa	Predicted RBP	13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	SLC28A2	O43868	658 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CCNB2	O95067	398 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	APOL3	O95236	402 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	GPC1	P35052	558 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	BCL6	P41182	706 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	SSR2	P43308	183 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CLDN2	P57739	230 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	DEFA1	P59665	94 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	DEFA3	P59666	94 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CXCR4	P61073	352 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	GALK2	Q01415	458 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	ZNF630	Q2M218	657 aa	Predicted RBP	13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	PARM1	Q6UWI2	310 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	ZNF605	Q86T29	641 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	OR14C36	Q8NHC7	312 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	SETD7	Q8WTS6	366 aa	Known RBP	13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	ARSG	Q96EG1	525 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	C16orf58	Q96GQ5	468 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	DNAJC27	Q9NZQ0	273 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	AIRE	O43918	545 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CKMT1A	P12532	417 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	GDI1	P31150	447 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	S100A5	P33763	92 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	MAPK9	P45984	424 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CCT3	P49368	545 aa	Known RBP	13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	TFF2	Q03403	129 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	KRT33B	Q14525	404 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CEP78	Q5JTW2	689 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	NDUFAF5	Q5TEU4	345 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	NXNL2	Q5VZ03	156 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	C18orf63	Q68DL7	685 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	TCTN3	Q6NUS6	607 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	ADAMTSL4	Q6UY14	1074 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CCDC116	Q8IYX3	515 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	STX19	Q8N4C7	294 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	OR2A1	Q8NGT9	310 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CHCHD6	Q9BRQ6	235 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CENPO	Q9BU64	300 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	SPATA9	Q9BWV2	254 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	GLIPR2	Q9H4G4	154 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	PLSCR3	Q9NRY6	295 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	MAU2	Q9Y6X3	613 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CFAP54	Q96N23	3096 aa		13.97	□□□□□ -0.17
DDX55-209	ENST00000542286	CLCA1	A8K7I4	914 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286		E9PQ18	207 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	AP3D1	O14617	1153 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	OR10H3	O60404	316 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	ICMT	O60725	284 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	ADORA3	P0DMS8	318 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	GABRB1	P18505	474 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	P2RX3	P56373	397 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	HOXC5	Q00444	222 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	EIF4H	Q15056	248 aa	Known RBP	13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	SAXO2	Q658L1	398 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	FRMD1	Q8N878	549 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	SIMC1	Q8NDZ2	872 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	HERVK_113	Q902F9	699 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	ZG16B	Q96DA0	208 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286		Q96MT0	163 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	PBX4	Q9BYU1	374 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	IRF2BPL	Q9H1B7	796 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	OR51I1	Q9H343	314 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	C6orf106	Q9H6K1	298 aa	Predicted RBP	13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	ZNF556	Q9HAH1	456 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	NPAP1	Q9NZP6	1156 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	WBP11	Q9Y2W2	641 aa	Known RBP	13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	HCN4	Q9Y3Q4	1203 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	PCDHGB6	Q9Y5F9	930 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	HSPE1-MOB4	S4R3N1	261 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	SPTB	P11277	2137 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	NUP210	Q8TEM1	1887 aa	Predicted RBP	13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	LOC105371267	A0A1B0GV96	52 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	ERI3	O43414	337 aa	Known RBP	13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	MED22	Q15528	200 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	IQCF2	Q8IXL9	164 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	UBQLNL	Q8IYU4	475 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	AMER2	Q8N7J2	671 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	CCL4L1	Q8NHW4	92 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	ZNF675	Q8TD23	568 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	SMPDL3A	Q92484	453 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	SLC38A4	Q969I6	547 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	UBE2E3	Q969T4	207 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	PDXP	Q96GD0	296 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	CAMK1G	Q96NX5	476 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	PHOX2B	Q99453	314 aa		13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	TREX2	Q9BQ50	279 aa	Predicted RBP	13.96	□□□□□ -0.17
DDX55-209	ENST00000542286	TTYH2	Q9BSA4	534 aa		13.96	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms