RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 EBLN1P0CF75 366 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 UNGP13051 313 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 AKR1C2P52895 323 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 AKR1C1Q04828 323 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 GRB7Q14451 532 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 MINDY4Q4G0A6 757 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 GLB1LQ6UWU2 654 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 HORMAD2Q8N7B1 307 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 LINC00469Q8N7U9 141 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 THEM6Q8WUY1 208 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ZBED6CLQ96FA7 236 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 C5orf34Q96MH7 638 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 SYNPO2LQ9H987 977 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 POMT1Q9Y6A1 747 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 A0A1B0GVT2 93 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 NUDT19A8MXV4 375 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 PCDH7O60245 1069 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 LY86O95711 162 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 NME2P22392 152 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 PYCR1P32322 319 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 SCNN1GP51170 649 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 TAP2Q03519 686 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 ZNF484Q5JVG2 852 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 PARGQ86W56 976 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 BAGE3Q86Y29 109 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 BAGE2Q86Y30 109 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 C1orf87Q8N0U7 546 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 TMEM130Q8N3G9 435 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 BRIX1Q8TDN6 353 aaKnown RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 GLYATL2Q8WU03 294 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 ZNF582Q96NG8 517 aaPredicted RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 SMIM3Q9BZL3 60 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 SLC25A32Q9H2D1 315 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 TMEM39AQ9NV64 488 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 URADA6NGE7 173 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 WNT9AO14904 365 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 JUNP05412 331 aaKnown RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 URODP06132 367 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 ZNF44P15621 663 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 BPIP17213 487 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 SLC26A5P58743 744 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 BTG1P62324 171 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 SNTB1Q13884 538 aaKnown RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 ADPRMQ3LIE5 342 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 C16orf59Q7L2K0 433 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 DPY19L4Q7Z388 723 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 B3GNT7Q8NFL0 401 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 LHFPL5Q8TAF8 219 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 STRA6Q9BX79 667 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 SLC29A3Q9BZD2 475 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 KCNH6Q9H252 994 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 EVA1BQ9NVM1 165 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 MIOXQ9UGB7 285 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 PCDHAC2Q9Y5I4 1007 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 A3GALT2U3KPV4 340 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 ACKR2O00590 384 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 MT-CYBP00156 380 aaPredicted RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 AHSGP02765 367 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 AMY2BP19961 511 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 CNR2P34972 360 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 ZNF84P51523 738 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 TAS2R31P59538 309 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 RANP62826 216 aaKnown RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 GPLD1P80108 840 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 CACNG1Q06432 222 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 GUK1Q16774 197 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 FIGNL1Q6PIW4 674 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 DHRS4L2Q6PKH6 230 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 TEX261Q6UWH6 196 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 C17orf64Q86WR6 236 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 C12orf29Q8N999 325 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 YIPF5Q969M3 257 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 KIAA1143Q96AT1 154 aaPredicted RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 FDXACB1Q9BRP7 624 aaPredicted RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 WASF3Q9UPY6 502 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 ERVW-1Q9UQF0 538 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 U3KQ87 197 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 A0A087X0M5 115 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 TRBV2A0A0J9YWF9 115 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 A0A1B0GX30 115 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 A6NIN4 97 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 SCAMP2O15127 329 aaKnown RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 TCRBP04435 133 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 CYP17A1P05093 508 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 KDELR2P33947 212 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 PRSS3P35030 304 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 MTNR1AP48039 350 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 HOXA1P49639 335 aaPredicted RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 REEP5Q00765 189 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 CAMK2BQ13554 666 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.38□□□□□ -1.074e-7■■■□□ 16.4
YBX3-208ENST00000540447 STEAP4Q687X5 459 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 APOOLQ6UXV4 268 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 ACBD7Q8N6N7 88 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 PIGBQ92521 554 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 FBXO8Q9NRD0 319 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 SLC2A9Q9NRM0 540 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 FAM212BQ9NTI7 297 aaPredicted RBP8.38□□□□□ -1.07
YBX3-208ENST00000540447 NLGN3Q9NZ94 848 aa8.38□□□□□ -1.07
YBX3-208ENST00000540447 KCMF1Q9P0J7 381 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms