RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ACVR2AP27037 513 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 CDC42P60953 191 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 CHRNEQ04844 493 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 ACSM5Q6NUN0 579 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 KIAA1324Q6UXG2 1013 aaKnown RBP15.96■□□□□ 0.15
USP28-208ENST00000540438 ZFPM2Q8WW38 1151 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 NEURL3Q96EH8 262 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 TRMT61AQ96FX7 289 aaKnown RBP15.96■□□□□ 0.15
USP28-208ENST00000540438 LINC00615Q96LM1 132 aaPredicted RBP15.96■□□□□ 0.15
USP28-208ENST00000540438 TMEM168Q9H0V1 697 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 NKX2-4Q9H2Z4 354 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 AKIP1Q9NQ31 210 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 SLC35C2Q9NQQ7 365 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 ERVK13-1Q9NX77 482 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 IFT52Q9Y366 437 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 ASCC3Q8N3C0 2202 aaKnown RBP15.96■□□□□ 0.15
USP28-208ENST00000540438 CENPVL1A0A0U1RR11 272 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 TLR4O00206 839 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 SLC22A1O15245 554 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 RASGRP1O95267 797 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 EPPINO95925 133 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 H1F0P07305 194 aaKnown RBP15.96■□□□□ 0.15
USP28-208ENST00000540438 ASGR2P07307 311 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 ACSL1P33121 698 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 BCAP31P51572 246 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 CAV3P56539 151 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 TJAP1Q5JTD0 557 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 SAXO2Q658L1 398 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 MFSD4AQ8N468 514 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 OR6Q1Q8NGQ2 317 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 OR5P2Q8WZ92 322 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 ZBED6CLQ96FA7 236 aaPredicted RBP15.96■□□□□ 0.15
USP28-208ENST00000540438 MGLLQ99685 303 aa15.96■□□□□ 0.15
USP28-208ENST00000540438 GSAPA4D1B5 854 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 KPNA4O00629 521 aaPredicted RBP15.95■□□□□ 0.14
USP28-208ENST00000540438 PRKYO43930 277 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 KIAA0513O60268 411 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 ITGA2P17301 1181 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 RHCEP18577 417 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 CDH3P22223 829 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 CD79BP40259 229 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 RAB28P51157 221 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 XKP51811 444 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 NKX2-5P52952 324 aaPredicted RBP15.95■□□□□ 0.14
USP28-208ENST00000540438 C21orf58P58505 322 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 TMEM196Q5HYL7 178 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 OR2G6Q5TZ20 316 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 LIPKQ5VXJ0 399 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 FBXO15Q8NCQ5 510 aaPredicted RBP15.95■□□□□ 0.14
USP28-208ENST00000540438 CREB3L4Q8TEY5 395 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 MYDGFQ969H8 173 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 ART5Q96L15 291 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 DNMT3AQ9Y6K1 912 aaPredicted RBP15.95■□□□□ 0.14
USP28-208ENST00000540438 APODP05090 189 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 POLR2CP19387 275 aaPredicted RBP15.95■□□□□ 0.14
USP28-208ENST00000540438 ACTR1BP42025 376 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 MAN2A2P49641 1150 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 RGS6P49758 472 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 PCBP4P57723 403 aaKnown RBP15.95■□□□□ 0.14
USP28-208ENST00000540438 ACTR1AP61163 376 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 ZNF846Q147U1 533 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 ADAMTSL4Q6UY14 1074 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 LCN9Q8WX39 176 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 NACC2Q96BF6 587 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 FNDC11Q9BVV2 318 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 PHPT1Q9NRX4 125 aaPredicted RBP15.95■□□□□ 0.14
USP28-208ENST00000540438 KIAA1549LQ6ZVL6 1849 aa15.95■□□□□ 0.14
USP28-208ENST00000540438 UGT2B17O75795 530 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 DNAJB5O75953 348 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 IFNA14P01570 189 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 SPNP16150 400 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 GABRB1P18505 474 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 MMP11P24347 488 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 RELAQ04206 551 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 FUT5Q11128 374 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 E2F2Q14209 437 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 INSL4Q14641 139 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 SLC9A5Q14940 896 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 EIF4HQ15056 248 aaKnown RBP15.94■□□□□ 0.14
USP28-208ENST00000540438 ZER1Q7Z7L7 766 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 DTX3Q8N9I9 347 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 SMAP2Q8WU79 429 aaPredicted RBP15.94■□□□□ 0.14
USP28-208ENST00000540438 HERVK_113Q902F9 699 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 HPS1Q92902 700 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 UCK2Q9BZX2 261 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 SNTG1Q9NSN8 517 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 GIN1Q9NXP7 522 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 TRIOBPQ9H2D6 2365 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 ASXL3Q9C0F0 2248 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 ARHGAP33O14559 1287 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 ADAM23O75077 832 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 LDB3O75112 727 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 CTSBP07858 339 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 PPP1CAP62136 330 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 REEP5Q00765 189 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 SYCE2Q6PIF2 218 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 DEFB119Q8N690 84 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 OR4K5Q8NGD3 323 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 MS4A6EQ96DS6 147 aa15.94■□□□□ 0.14
USP28-208ENST00000540438 CNDP2Q96KP4 475 aaKnown RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms