RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 OR5K2Q8NHB8 316 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 MENTQ9BUN1 341 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 SRRQ9GZT4 340 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 SSR3Q9UNL2 185 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 DIMT1Q9UNQ2 313 aaKnown RBP18.2■□□□□ 0.5
VPS28-213ENST00000530983 IQCMA0A1B0GVH7 501 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 AP3D1O14617 1153 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 PLD2O14939 933 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 AZGP1P25311 298 aaKnown RBP18.2■□□□□ 0.5
VPS28-213ENST00000530983 REEP5Q00765 189 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 LARS2Q15031 903 aaKnown RBP18.2■□□□□ 0.5
VPS28-213ENST00000530983 PRR23CQ6ZRP0 262 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 AMZ2Q86W34 360 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 GALNT6Q8NCL4 622 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 TMIEQ8NEW7 156 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 WFIKKN2Q8TEU8 576 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 XAGE5Q8WWM1 108 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 FGF11Q92914 225 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 GPA33Q99795 319 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 TM7SF3Q9NS93 570 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 ACSS1Q9NUB1 689 aaPredicted RBP18.2■□□□□ 0.5
VPS28-213ENST00000530983 TESQ9UGI8 421 aaKnown RBP18.2■□□□□ 0.5
VPS28-213ENST00000530983 PCDHGB2Q9Y5G2 931 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 NOTOA8MTQ0 251 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 NDUFS4O43181 175 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 EPPINO95925 133 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 CLTBP09497 229 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 ETV5P41161 510 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 ETV1P50549 477 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 CCR8P51685 355 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 MXD1Q05195 221 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 ARHGAP19Q14CB8 494 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 ACSM5Q6NUN0 579 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 ZNF544Q6NX49 715 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 CD300LDQ6UXZ3 194 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 SZRD1Q7Z422 152 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 OR4K5Q8NGD3 323 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 SLC25A46Q96AG3 418 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 ZNF764Q96H86 408 aaPredicted RBP18.19■□□□□ 0.5
VPS28-213ENST00000530983 QRFPRQ96P65 431 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 KCNK12Q9HB15 430 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 TXNL4BQ9NX01 149 aaKnown RBP18.19■□□□□ 0.5
VPS28-213ENST00000530983 IRAK3Q9Y616 596 aa18.19■□□□□ 0.5
VPS28-213ENST00000530983 A0A0G2JN53 185 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 A0A1W2PPV9 198 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 TNFRSF10AO00220 468 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 PPM1DO15297 605 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 IL7P13232 177 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 RUNX1T1Q06455 604 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 RPA4Q13156 261 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 GINS1Q14691 196 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 FNDC3BQ53EP0 1204 aaKnown RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 SLC25A30Q5SVS4 291 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 USP30Q70CQ3 517 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 ERN2Q76MJ5 926 aaKnown RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 HMGN2P46Q86SG4 172 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 GATAD2AQ86YP4 633 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 OR9Q1Q8NGQ5 310 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 OR8D1Q8WZ84 308 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 OTUB1Q96FW1 271 aaPredicted RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 SLC35G5Q96KT7 338 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 LRR1Q96L50 414 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 SNX18Q96RF0 628 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 SLC27A6Q9Y2P4 619 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 GRIP1Q9Y3R0 1128 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 CMAHPQ9Y471 501 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 C5orf42Q9H799 3197 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 MUC22E2RYF6 1773 aaPredicted RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 CHD7Q9P2D1 2997 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 WASHC1A8K0Z3 465 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 SLC9A3R1O14745 358 aaPredicted RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 CDRT1O95170 752 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 RAB36O95755 333 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 NR2F1P10589 423 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 GIPRP48546 466 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 EFNB1P98172 346 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 COX10Q12887 443 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 MLC1Q15049 377 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 HNRNPA1L2Q32P51 320 aaKnown RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 ARMC4Q5T2S8 1044 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 WASH2PQ6VEQ5 465 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 DENND4AQ7Z401 1863 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 IQCHQ86VS3 1027 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 ASCC1Q8N9N2 400 aaKnown RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 TP53I13Q8NBR0 393 aaPredicted RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 OR6T1Q8NGN1 323 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 RGMAQ96B86 450 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 COX14Q96I36 57 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 ZNF582Q96NG8 517 aaPredicted RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 NELL2Q99435 816 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 FNDC11Q9BVV2 318 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 GLIPR2Q9H4G4 154 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 MYO10Q9HD67 2058 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 DDX28Q9NUL7 540 aaKnown RBP18.18■□□□□ 0.5
VPS28-213ENST00000530983 NUMA1Q14980 2115 aa18.18■□□□□ 0.5
VPS28-213ENST00000530983 EPHX1P07099 455 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 MSL3P1P0C860 447 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 CPEP16870 476 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 CEBPBP17676 345 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 ARPC4P59998 168 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms