RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 EBPLQ9BY08 206 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 SLC26A1Q9H2B4 701 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 POLR1BQ9H9Y6 1135 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 MKKSQ9NPJ1 570 aaPredicted RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 MIEF1Q9NQG6 463 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 SLC35C2Q9NQQ7 365 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 ACSS1Q9NUB1 689 aaPredicted RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 TEX10Q9NXF1 929 aaPredicted RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 SH3BP4Q9P0V3 963 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 ARMCX1Q9P291 453 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 DHCR7Q9UBM7 475 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 SUCOQ9UBS9 1254 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 NDOR1Q9UHB4 597 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 TAGLN3Q9UI15 199 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 PADI1Q9ULC6 663 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 MRPS33Q9Y291 106 aaKnown RBP6.95□□□□□ -1.3
CD44-228ENST00000528455 PCDHGA7Q9Y5G6 932 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 B3GALT1Q9Y5Z6 326 aa6.95□□□□□ -1.3
CD44-228ENST00000528455 ZFYVE26Q68DK2 2539 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 A0A087WV48 116 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 A0A1W2PNU3 283 aaPredicted RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 VSTM2BA6NLU5 285 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 BBIP1A8MTZ0 92 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 MYO1GB0I1T2 1018 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 RNASET2O00584 256 aaKnown RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 AKAP10O43572 662 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 BRINP1O60477 761 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 SCN2BO60939 215 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 RDH16O75452 317 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 TNFSF15O95150 251 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 LRATO95237 230 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 BMP10O95393 424 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 IL3P08700 152 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 LAMP1P11279 417 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 COX7A2P14406 83 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 CSNK2A2P19784 350 aaPredicted RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 ITIH1P19827 911 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 FBLP22087 321 aaKnown RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 CALB2P22676 271 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 CD82P27701 267 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 GALNSP34059 522 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 EIF2S3P41091 472 aaKnown RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 ETV5P41161 510 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 FRKP42685 505 aaPredicted RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 OR1D4P47884 311 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 TRPC1P48995 793 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 MAPK10P53779 464 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 NME5P56597 212 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 WNT3P56703 355 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 PHC1P78364 1004 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 TNFRSF17Q02223 184 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 OCA2Q04671 838 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 BNIP1Q12981 228 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 MAPKAPK3Q16644 382 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 FAM174BQ3ZCQ3 159 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 VPS26BQ4G0F5 336 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 C18orf63Q68DL7 685 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 YTHDF3Q7Z739 585 aaKnown RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 TICAM1Q8IUC6 712 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 DPP10Q8N608 796 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 OR5T3Q8NGG3 340 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 OR9I1Q8NGQ6 314 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 GOT1L1Q8NHS2 421 aaPredicted RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 CLHC1Q8NHS4 586 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 OR5P2Q8WZ92 322 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 GFM2Q969S9 779 aaKnown RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 FKBP10Q96AY3 582 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 PPCDCQ96CD2 204 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 DHRS1Q96LJ7 313 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 ZNF681Q96N22 645 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 ZNF578Q96N58 590 aaPredicted RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 OR52E6Q96RD3 313 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 CTRCQ99895 268 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 HOPXQ9BPY8 73 aaPredicted RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 DUSP26Q9BV47 211 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 ULBP3Q9BZM4 244 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 C1orf21Q9H246 121 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 RMND5AQ9H871 391 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 WDR54Q9H977 334 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 SLC22A11Q9NSA0 550 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 FAM120CQ9NX05 1096 aaKnown RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 TRPC4Q9UBN4 977 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 ZNF282Q9UDV7 671 aaPredicted RBP6.94□□□□□ -1.3
CD44-228ENST00000528455 BTNL2Q9UIR0 455 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 UTS2RQ9UKP6 389 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 PCDHGB4Q9UN71 923 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 SATB2Q9UPW6 733 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 MMACHCQ9Y4U1 282 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 ZNF780BQ9Y6R6 833 aa6.94□□□□□ -1.3
CD44-228ENST00000528455 A0A1W2PRB8 838 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 WASHC1A8K0Z3 465 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 FAM227AF5H4B4 570 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 PCDH17O14917 1159 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ANGPT2O15123 496 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 TLX3O43711 291 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 ERN1O75460 977 aaKnown RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 STK17BO94768 372 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 KIAA0754O94854 1291 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 AIFM1O95831 613 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms