RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ANHXE9PGG2 379 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 K7EPI3 171 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 ARPC1BO15143 372 aaKnown RBP3.61□□□□□ -1.83
CD44-223ENST00000526553 ZNF354AO60765 605 aaPredicted RBP3.61□□□□□ -1.83
CD44-223ENST00000526553 RENP00797 406 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 PDGFBP01127 241 aaPredicted RBP3.61□□□□□ -1.83
CD44-223ENST00000526553 RPA1P27694 616 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 CHRNA3P32297 505 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 ACAA2P42765 397 aaKnown RBP3.61□□□□□ -1.83
CD44-223ENST00000526553 TNFRSF4P43489 277 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 TKTL1P51854 596 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 HSPA14Q0VDF9 509 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 SCGB2A2Q13296 93 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 MSLNQ13421 630 aaPredicted RBP3.61□□□□□ -1.83
CD44-223ENST00000526553 MEF2DQ14814 521 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 TRADDQ15628 312 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 EPC2Q52LR7 807 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 MUC21Q5SSG8 566 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 NKAIN2Q5VXU1 208 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 RNLSQ5VYX0 342 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 HIST2H2AA3Q6FI13 130 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 IRGCQ6NXR0 463 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 REG3GQ6UW15 175 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 C17orf64Q86WR6 236 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 RNF148Q8N7C7 305 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 FAM71CQ8NEG0 241 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 C8orf46Q8TAG6 207 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 TYMSOSQ8TAI1 123 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 SMPDL3AQ92484 453 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 SLC35C1Q96A29 364 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 ESAMQ96AP7 390 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 COQ7Q99807 217 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 NMNAT2Q9BZQ4 307 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 DPH5Q9H2P9 285 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 RWDD1Q9H446 243 aaPredicted RBP3.61□□□□□ -1.83
CD44-223ENST00000526553 PLEK2Q9NYT0 353 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 ZNF319Q9P2F9 582 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 SPATA2Q9UM82 520 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 ZNF318Q5VUA4 2279 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 CHD1O14646 1710 aa3.61□□□□□ -1.83
CD44-223ENST00000526553 FANCD2Q9BXW9 1451 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 PEG3Q9GZU2 1588 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 WIZO95785 1651 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 A0A087WWV3 80 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 TRBV5-4A0A0C4DH59 114 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 P2RX6O15547 441 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 IGKV3-15P01624 115 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 HIST1H2AGP0C0S8 130 aaPredicted RBP3.6□□□□□ -1.83
CD44-223ENST00000526553 RALAP11233 206 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 PRKCEQ02156 737 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 MFGE8Q08431 387 aaPredicted RBP3.6□□□□□ -1.83
CD44-223ENST00000526553 C3AR1Q16581 482 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 ECSCRQ19T08 205 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 MPPE1Q53F39 396 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 C1orf189Q5VU69 101 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 LYPLAL1Q5VWZ2 237 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 BAIAP2L2Q6UXY1 529 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.6□□□□□ -1.83
CD44-223ENST00000526553 COLGALT1Q8NBJ5 622 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 OR56B1Q8NGI3 324 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 OR6M1Q8NGM8 313 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 OR1B1Q8NGR6 318 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 GOLGA5Q8TBA6 731 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 DQX1Q8TE96 717 aaKnown RBP3.6□□□□□ -1.83
CD44-223ENST00000526553 LIPHQ8WWY8 451 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 HIST1H2ACQ93077 130 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 RPGRIP1Q96KN7 1286 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 TNFRSF13CQ96RJ3 184 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 NACA2Q9H009 215 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 DPEP3Q9H4B8 488 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 ECT2Q9H8V3 914 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 NMUR1Q9HB89 426 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 DDX28Q9NUL7 540 aaKnown RBP3.6□□□□□ -1.83
CD44-223ENST00000526553 SOHLH2Q9NX45 425 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 VPS54Q9P1Q0 977 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 ANKMY1Q9P2S6 941 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 ZNF107Q9UII5 783 aaPredicted RBP3.6□□□□□ -1.83
CD44-223ENST00000526553 PLA2G4CQ9UP65 541 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 U3KQV3 271 aa3.6□□□□□ -1.83
CD44-223ENST00000526553 A0A1B0GTH9 108 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 RPL37AP8A6NKH3 93 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 A8MU10 97 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 FBP2O00757 339 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 PHOX2AO14813 284 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 CLDN3O15551 220 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 SMPD2O60906 423 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 MT-ND1P03886 318 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 KRTAP1-4P0C5Y4 121 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 OR1D2P34982 312 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 ELK3P41970 407 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 SLC1A4P43007 532 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 PITPNBP48739 271 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 GEMP55040 296 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 CDKL1Q00532 357 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 RBBP4Q09028 425 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 PDZK1IP1Q13113 114 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 SNX1Q13596 522 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 FASTKQ14296 549 aaKnown RBP3.59□□□□□ -1.83
CD44-223ENST00000526553 HEPACAMQ14CZ8 416 aa3.59□□□□□ -1.83
CD44-223ENST00000526553 KARSQ15046 597 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms