RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 SIM1P81133 766 aaPredicted RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 CDK6Q00534 326 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 HSF1Q00613 529 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 CACNB1Q02641 598 aaPredicted RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 SERINC3Q13530 473 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 GPR176Q14439 515 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 GBX1Q14549 363 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 GRIN2CQ14957 1233 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 RBMS2Q15434 407 aaKnown RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 Q3C1V9 767 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 SLC36A3Q495N2 470 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 C9orf135Q5VTT2 229 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 RFWD3Q6PCD5 774 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 NXPE4Q6UWF7 544 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 BTNL8Q6UX41 500 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 IL20RBQ6UXL0 311 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 HSD17B13Q7Z5P4 300 aaPredicted RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 LRP11Q86VZ4 500 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 BAGE3Q86Y29 109 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 BAGE2Q86Y30 109 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 IGDCC3Q8IVU1 814 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 CADM2Q8N3J6 435 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 CPXM2Q8N436 756 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 ZNF433Q8N7K0 673 aaPredicted RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 SLAIN1Q8ND83 568 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 ZNF738Q8NE65 137 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 BPIFCQ8NFQ6 507 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 LNX1Q8TBB1 728 aaPredicted RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 SHKBP1Q8TBC3 707 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 ACTL9Q8TC94 416 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 GPR151Q8TDV0 419 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 OTUD7AQ8TE49 926 aaPredicted RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 APH1BQ8WW43 257 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 HAS2Q92819 552 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 LENG9Q96B70 501 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 FBXL8Q96CD0 374 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 MFSD3Q96ES6 412 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 CCDC120Q96HB5 630 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 ZNF512BQ96KM6 892 aaPredicted RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 PRMT6Q96LA8 375 aaPredicted RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 TRIB3Q96RU7 358 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 FEM1AQ9BSK4 669 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 RSG1Q9BU20 258 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 C1QTNF7Q9BXJ2 289 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 DUSP16Q9BY84 665 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 RBCK1Q9BYM8 510 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 TXLNGYQ9BZA5 131 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 ACTL8Q9H568 366 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 MVB12BQ9H7P6 319 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 SLC6A20Q9NP91 592 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 RBFOX1Q9NWB1 397 aaKnown RBP3.43□□□□□ -1.86
USP53-205ENST00000509769 LRFN2Q9ULH4 789 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 ASF1AQ9Y294 204 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 BTRCQ9Y297 605 aa3.43□□□□□ -1.86
USP53-205ENST00000509769 SLC22A23A1A5C7 686 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 USP17L3A6NCW0 530 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ANKUB1A6NFN9 424 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 WASHC1A8K0Z3 465 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 DCDC2CA8MYV0 355 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 WASH3PC4AMC7 463 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 GAPDHSO14556 408 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 ADAM23O75077 832 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OLFM2O95897 454 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SERPINA5P05154 406 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SNRNP70P08621 437 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 FBP1P09467 338 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OR13C7P0DN81 318 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CALCBP10092 127 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PIM1P11309 404 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 ELK1P19419 428 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 GLRA2P23416 452 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CXCR1P25024 350 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 NUMBP49757 651 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 NPY4RP50391 375 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PEX3P56589 373 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 KCNJ10P78508 379 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 NFKB2Q00653 900 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SLC6A3Q01959 620 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 MTMR1Q13613 665 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 UBAP2LQ14157 1087 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 CERKLQ49MI3 558 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 SGO1Q5FBB7 561 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TMEM69Q5SWH9 247 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OR2G6Q5TZ20 316 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 LEMD1Q68G75 181 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SLC30A6Q6NXT4 461 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 FAM183BPQ6ZVS7 135 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OTOP1Q7RTM1 612 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OTOP3Q7RTS5 596 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 USP17L1Q7RTZ2 530 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 FAM83AQ86UY5 434 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 FAM185AQ8N0U4 392 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ABRAQ8N0Z2 381 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 EIF4E3Q8N5X7 224 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 SLC15A4Q8N697 577 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OR13C5Q8NGS8 318 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OR13C6PQ8NH95 151 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 BRIX1Q8TDN6 353 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 ZNF516Q92618 1163 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 DVL3Q92997 716 aaPredicted RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms