RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 TEX28O15482 410 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 FABP7O15540 132 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 GREM1O60565 184 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 NME6O75414 186 aaPredicted RBP16.8■□□□□ 0.28
NUP54-205ENST00000507257 RAF1P04049 648 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 CYBAP13498 195 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 TNNI3P19429 210 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 POU3F3P20264 500 aaPredicted RBP16.8■□□□□ 0.28
NUP54-205ENST00000507257 TAS2R50P59544 299 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 DCDC1P59894 354 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 FKBP1BP68106 108 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 OR2G6Q5TZ20 316 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 C1orf94Q6P1W5 598 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 RFLNAQ6ZTI6 216 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 NEIL2Q969S2 332 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 SCMH1Q96GD3 660 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 TMEM19Q96HH6 336 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 CPEB1Q9BZB8 566 aaKnown RBP16.8■□□□□ 0.28
NUP54-205ENST00000507257 CXorf36Q9H7Y0 433 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 RNF181Q9P0P0 153 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 A4GNTQ9UNA3 340 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 SMLR1H3BR10 107 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 SH3BGRLO75368 114 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 SLC16A8O95907 504 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 LIMS3P0CW19 117 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 LIMS4P0CW20 117 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 MTNR1AP48039 350 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 AGFG1P52594 562 aaKnown RBP16.8■□□□□ 0.28
NUP54-205ENST00000507257 TMEM44Q2T9K0 475 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 ACSM5Q6NUN0 579 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 IQCF1Q8N6M8 205 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 LRRC17Q8N6Y2 441 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 GATAD2BQ8WXI9 593 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 OR5P2Q8WZ92 322 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 UPF1Q92900 1129 aaKnown RBP eCLIP16.8■□□□□ 0.281e-7■□□□□ 10.5
NUP54-205ENST00000507257 HGDQ93099 445 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 OTULINQ96BN8 352 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 C11orf49Q9H6J7 331 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 ELAC1Q9H777 363 aaKnown RBP16.8■□□□□ 0.28
NUP54-205ENST00000507257 ZFP64Q9NPA5 681 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 NFKBIL1Q9UBC1 381 aaPredicted RBP16.8■□□□□ 0.28
NUP54-205ENST00000507257 FBXW2Q9UKT8 454 aa16.8■□□□□ 0.28
NUP54-205ENST00000507257 NINQ8N4C6 2090 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 PLXNA2O75051 1894 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 CHST10O43529 356 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 MMP20O60882 483 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 ADAMTS4O75173 837 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 DHFRP00374 187 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 BCHEP06276 602 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 IFI30P13284 250 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 SLC11A1P49279 550 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 SMAD3P84022 425 aaKnown RBP16.79■□□□□ 0.28
NUP54-205ENST00000507257 PRSS53Q2L4Q9 553 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 RPS26P11Q5JNZ5 115 aaPredicted RBP16.79■□□□□ 0.28
NUP54-205ENST00000507257 CD276Q5ZPR3 534 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 TMPRSS11BQ86T26 416 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 GPALPP1Q8IXQ4 340 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 CELF5Q8N6W0 485 aaKnown RBP16.79■□□□□ 0.28
NUP54-205ENST00000507257 HORMAD2Q8N7B1 307 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 WDR48Q8TAF3 677 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 ZNF431Q8TF32 576 aaPredicted RBP16.79■□□□□ 0.28
NUP54-205ENST00000507257 SORCS2Q96PQ0 1159 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 GFM1Q96RP9 751 aaKnown RBP16.79■□□□□ 0.28
NUP54-205ENST00000507257 ZNF607Q96SK3 696 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 TMEM121BQ9BXQ6 578 aaPredicted RBP16.79■□□□□ 0.28
NUP54-205ENST00000507257 RSPO3Q9BXY4 272 aaPredicted RBP16.79■□□□□ 0.28
NUP54-205ENST00000507257 SLC6A16Q9GZN6 736 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 MED28Q9H204 178 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 GHITMQ9H3K2 345 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 TAAR2Q9P1P5 351 aa16.79■□□□□ 0.28
NUP54-205ENST00000507257 A0A0A6YYJ9 748 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 SLC5A10A0PJK1 596 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 ASGR1P07306 291 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 MMP11P24347 488 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 CAV3P56539 151 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 GPR176Q14439 515 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 NFE2L1Q14494 772 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 SNAPC1Q16533 368 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 CLLU1Q5K131 121 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 MPP7Q5T2T1 576 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 FAM205BPQ63HN1 556 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 ZNF57Q68EA5 555 aaPredicted RBP16.78■□□□□ 0.28
NUP54-205ENST00000507257 PODNL1Q6PEZ8 512 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 DEF8Q6ZN54 512 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 ABI3BPQ7Z7G0 1075 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 ZER1Q7Z7L7 766 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 GRAMD2AQ8IUY3 354 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 ADGRF3Q8IZF5 1079 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 POGLUT1Q8NBL1 392 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 OR4D11Q8NGI4 311 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 NEIL3Q8TAT5 605 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 SMG7Q92540 1137 aaKnown RBP16.78■□□□□ 0.28
NUP54-205ENST00000507257 TMEM159Q96B96 161 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 KCTD12Q96CX2 325 aaKnown RBP16.78■□□□□ 0.28
NUP54-205ENST00000507257 OMA1Q96E52 524 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 TMEM169Q96HH4 297 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 RADILQ96JH8 1075 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 JAM3Q9BX67 310 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 HEXA-AS1Q9H8Q6 139 aa16.78■□□□□ 0.28
NUP54-205ENST00000507257 NEUROD4Q9HD90 331 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms