RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 ADIPOR1Q96A54 375 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 CDK15Q96Q40 435 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 SECISBP2Q96T21 854 aaKnown RBP20.23■□□□□ 0.83
HDDC3-203ENST00000494993 TIMP4Q99727 224 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 FOXC2Q99958 501 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 SH3GL2Q99962 352 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 ANGPTL4Q9BY76 406 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 OR10A5Q9H207 317 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 CXXC4Q9H2H0 198 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 UBQLN3Q9H347 655 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 NOL11Q9H8H0 719 aaKnown RBP20.23■□□□□ 0.83
HDDC3-203ENST00000494993 CCM2LQ9NUG4 571 aaPredicted RBP20.23■□□□□ 0.83
HDDC3-203ENST00000494993 CRIM1Q9NZV1 1036 aa20.23■□□□□ 0.83
HDDC3-203ENST00000494993 FAM221AA4D161 298 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 OR7A17O14581 309 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 TRAPPC6AO75865 159 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 SNX4O95219 450 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 ALDOAP04075 364 aaKnown RBP20.22■□□□□ 0.83
HDDC3-203ENST00000494993 TYK2P29597 1187 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 TIMP3P35625 211 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 ARL1P40616 181 aaPredicted RBP20.22■□□□□ 0.83
HDDC3-203ENST00000494993 SERPINB8P50452 374 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 CDK9P50750 372 aaKnown RBP20.22■□□□□ 0.83
HDDC3-203ENST00000494993 WNT3P56703 355 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 NRG3P56975 720 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 UAP1Q16222 522 aaPredicted RBP20.22■□□□□ 0.83
HDDC3-203ENST00000494993 FNDC7Q5VTL7 733 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 LACC1Q8IV20 430 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 PM20D2Q8IYS1 436 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 OR4K14Q8NGD5 310 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 OR52B6Q8NGF0 335 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 LRRC46Q96FV0 321 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 PRDM14Q9GZV8 571 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 CLEC4MQ9H2X3 399 aaPredicted RBP20.22■□□□□ 0.83
HDDC3-203ENST00000494993 RASSF1Q9NS23 344 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 ST6GALNAC2Q9UJ37 374 aa20.22■□□□□ 0.83
HDDC3-203ENST00000494993 ACSL3O95573 720 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 HPNP05981 417 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 CASP3P42574 277 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 MASP1P48740 699 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 CCNG1P51959 295 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 RPP38P78345 283 aaKnown RBP20.21■□□□□ 0.83
HDDC3-203ENST00000494993 FBXL19-AS1Q494R0 122 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 FLYWCH1Q4VC44 716 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 C6orf163Q5TEZ5 329 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 PACS2Q86VP3 889 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 PRR22Q8IZ63 422 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 PTGR2Q8N8N7 351 aaPredicted RBP20.21■□□□□ 0.83
HDDC3-203ENST00000494993 C17orf47Q8NEP4 570 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 RNASE6Q93091 150 aaKnown RBP20.21■□□□□ 0.83
HDDC3-203ENST00000494993 ATP6V1E2Q96A05 226 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 TMUB1Q9BVT8 246 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 VPS11Q9H270 941 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 LIME1Q9H400 295 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 MTRF1LQ9UGC7 380 aaKnown RBP20.21■□□□□ 0.83
HDDC3-203ENST00000494993 ADAM29Q9UKF5 820 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 C15orf41Q9Y2V0 281 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 ACANP16112 2415 aa20.21■□□□□ 0.83
HDDC3-203ENST00000494993 KRT38O76015 456 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 IL2RAP01589 272 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 KLK1P06870 262 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 CD99P14209 185 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 CPMP14384 443 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 NT5EP21589 574 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 CASQ1P31415 396 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 XKP51811 444 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 FRG2Q64ET8 278 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 VASNQ6EMK4 673 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 POMZP3Q6PJE2 187 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 PLD6Q8N2A8 252 aaKnown RBP20.2■□□□□ 0.82
HDDC3-203ENST00000494993 OR7G1Q8NGA0 311 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 PHF21BQ96EK2 531 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 HSPBAP1Q96EW2 488 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 TMEM41AQ96HV5 264 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 GNRHR2Q96P88 292 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 FRG2BQ96QU4 278 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 NTMT1Q9BV86 223 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 MRPL1Q9BYD6 325 aaKnown RBP20.2■□□□□ 0.82
HDDC3-203ENST00000494993 ZNF629Q9UEG4 869 aaPredicted RBP20.2■□□□□ 0.82
HDDC3-203ENST00000494993 FOXD3Q9UJU5 478 aaPredicted RBP20.2■□□□□ 0.82
HDDC3-203ENST00000494993 SLC6A5Q9Y345 797 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 MED12LQ86YW9 2145 aa20.2■□□□□ 0.82
HDDC3-203ENST00000494993 ESYT3A0FGR9 886 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 A6NNC1 897 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 PORP16435 677 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-203ENST00000494993 GPX3P22352 226 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 ABCD3P28288 659 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 ZNF136P52737 540 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 TRAF3Q13114 568 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 SF3B4Q15427 424 aaKnown RBP eCLIP20.19■□□□□ 0.821e-6■■□□□ 12.8
HDDC3-203ENST00000494993 NHSL2Q5HYW2 709 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 C10orf62Q5T681 223 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-203ENST00000494993 NSUN5P2Q63ZY6 315 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 TTC19Q6DKK2 380 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-203ENST00000494993 PAGE2Q7Z2X7 111 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 CHDHQ8NE62 594 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-203ENST00000494993 FAM222BQ8WU58 562 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 NTNG2Q96CW9 530 aa20.19■□□□□ 0.82
HDDC3-203ENST00000494993 RMND5BQ96G75 393 aaPredicted RBP20.19■□□□□ 0.82
HDDC3-203ENST00000494993 NXF5Q9H1B4 397 aaKnown RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms