RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 TYRP14679 529 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CPEP16870 476 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 BPIP17213 487 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CXCL2P19875 107 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 POU3F2P20265 443 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 FDXRP22570 491 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 WARSP23381 471 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 DDX6P26196 483 aaKnown RBP eCLIP4.52□□□□□ -1.693e-6■□□□□ 10
SNRNP40-206ENST00000489853 HOXC13P31276 330 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 FGF9P31371 208 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 GRK4P32298 578 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PTGFRP43088 359 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 POU3F4P49335 361 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 RIDAP52758 137 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 MAZP56270 477 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CTBP2P56545 445 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 RAB5BP61020 215 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 DCDP81605 110 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 VLDLRP98155 873 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CAP1Q01518 475 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 DEFA6Q01524 100 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 ZNF33AQ06730 810 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 ZNF155Q12901 538 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 SERTAD2Q14140 314 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 DOC2BQ14184 412 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 ERV3-1Q14264 604 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PTPRCAPQ14761 206 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 UBXN2BQ14CS0 331 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PON3Q15166 354 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 OR4D1Q15615 310 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 UGT8Q16880 541 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 FAM187BQ17R55 369 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PLK5Q496M5 336 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 SYTL3Q4VX76 610 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 NOMO2Q5JPE7 1267 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 LRIF1Q5T3J3 769 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 ZNF648Q5T619 568 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 DCAF15Q66K64 600 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 IL31Q6EBC2 164 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 MSANTD2Q6P1R3 559 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 UQCC3Q6UW78 93 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 SCIMPQ6UWF3 145 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 SEZ6L2Q6UXD5 910 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PTCHD4Q6ZW05 846 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CBLL1Q75N03 491 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 SLC9B2Q86UD5 537 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CMIPQ8IY22 773 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PHACTR4Q8IZ21 702 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 SPAG16Q8N0X2 631 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 SVBPQ8N300 66 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 FBXO39Q8N4B4 442 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 WDSUB1Q8N9V3 476 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 NETO2Q8NC67 525 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 OR10Q1Q8NGQ4 319 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 TM9SF4Q92544 642 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 KAT2AQ92830 837 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 EXT2Q93063 718 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 KISS1RQ969F8 398 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PPP1R14AQ96A00 147 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CPNE4Q96A23 557 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 RFT1Q96AA3 541 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 TRIM43Q96BQ3 446 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PABPC5Q96DU9 382 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 TCEAL4Q96EI5 215 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 TSGA13Q96PP4 275 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 NELL2Q99435 816 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PARK7Q99497 189 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 ATF6BQ99941 703 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 MRPL45Q9BRJ2 306 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CRB3Q9BUF7 120 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 B3GNT5Q9BYG0 378 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 NRSN2Q9GZP1 204 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 METTL17Q9H7H0 456 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 GLOD4Q9HC38 313 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 FZD3Q9NPG1 666 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 ISYNA1Q9NPH2 558 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 PRMT8Q9NR22 394 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 NUDT15Q9NV35 164 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 TREM2Q9NZC2 230 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 EXO1Q9UQ84 846 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 MRPS23Q9Y3D9 190 aaKnown RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 BACE2Q9Y5Z0 518 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 AP1M2Q9Y6Q5 423 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 QSER1Q2KHR3 1735 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 TP53BP1Q12888 1972 aaPredicted RBP4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 OTOFQ9HC10 1997 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 LOC105369274A0A096LPK9 316 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 TRBV23-1A0A0A0MS06 115 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 CDC14CA4D256 554 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 C5orf52A6NGY3 159 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 OR6C75A6NL08 312 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 HMSDA8MTL9 139 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 ARHGEF33A8MVX0 844 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 J3KR12 359 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 TNFRSF11BO00300 401 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 SLC31A2O15432 143 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 VEGFDO43915 354 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 KLK8O60259 260 aa4.52□□□□□ -1.69
SNRNP40-206ENST00000489853 ITGA10O75578 1167 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms