RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C11orf74Q86VG3 221 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 OR4K5Q8NGD3 323 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 OR6T1Q8NGN1 323 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 GPR151Q8TDV0 419 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 RASSF5Q8WWW0 418 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 SUSD6Q92537 303 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 QRSL1Q9H0R6 528 aaKnown RBP16.95■□□□□ 0.3
VIM-206ENST00000487938 DDX31Q9H8H2 851 aaKnown RBP16.95■□□□□ 0.3
VIM-206ENST00000487938 ACSS1Q9NUB1 689 aaPredicted RBP16.95■□□□□ 0.3
VIM-206ENST00000487938 KLHL3Q9UH77 587 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 KLHL20Q9Y2M5 609 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 DOCK9Q9BZ29 2069 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 HEATR5BQ9P2D3 2071 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 A0A075B6Q4 140 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 IGKV1-8A0A0C4DH67 115 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 SLC35G4P0C7Q5 338 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 BUD31P41223 144 aaPredicted RBP16.95■□□□□ 0.3
VIM-206ENST00000487938 SMIM11AP58511 58 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.95■□□□□ 0.3
VIM-206ENST00000487938 UTS2BQ765I0 119 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 TMEM203Q969S6 136 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 PRSS16Q9NQE7 514 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 MUTYHQ9UIF7 546 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 CARD8Q9Y2G2 431 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 PCDHGA4Q9Y5G9 962 aa16.95■□□□□ 0.3
VIM-206ENST00000487938 PGRMC2O15173 223 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 SNX4O95219 450 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 APOA1P02647 267 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 C8orf89P0DMQ9 161 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 HOXB3P14651 431 aaPredicted RBP16.94■□□□□ 0.3
VIM-206ENST00000487938 CASP3P42574 277 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 FAM78AQ5JUQ0 283 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 TMC5Q6UXY8 1006 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 OR52I1Q8NGK6 324 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 CREB3L4Q8TEY5 395 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 KLK6Q92876 244 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 LRR1Q96L50 414 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 C12orf66Q96MD2 445 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 BBS4Q96RK4 519 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 INSM2Q96T92 566 aaPredicted RBP16.94■□□□□ 0.3
VIM-206ENST00000487938 PCBD2Q9H0N5 130 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 SLC35C2Q9NQQ7 365 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 MAN2C1Q9NTJ4 1040 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 HCN2Q9UL51 889 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 STUB1Q9UNE7 303 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 COL4A3Q01955 1670 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 MYO10Q9HD67 2058 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 A0A0A6YYD5 115 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 A0A1W2PS29 197 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 LRIT2A6NDA9 550 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 MYL12BO14950 172 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 CHRM4P08173 479 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 ACP5P13686 325 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 PPP2R1BP30154 601 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 HOXD12P35452 270 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 HSD17B2P37059 387 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 ETV5P41161 510 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 WASP42768 502 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 GIPRP48546 466 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 PCYT1AP49585 367 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 ETV1P50549 477 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 RORCP51449 518 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 MLF2Q15773 248 aaPredicted RBP16.94■□□□□ 0.3
VIM-206ENST00000487938 OCLNQ16625 522 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 PIP5KL1Q5T9C9 394 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 USP30Q70CQ3 517 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 KRT73Q86Y46 540 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 LAX1Q8IWV1 398 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 CCDC116Q8IYX3 515 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 PROKR2Q8NFJ6 384 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 IL17RDQ8NFM7 739 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 ASB15Q8WXK1 588 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 C16orf58Q96GQ5 468 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 SEC14L4Q9UDX3 406 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 KCNE3Q9Y6H6 103 aa16.94■□□□□ 0.3
VIM-206ENST00000487938 TRPM6Q9BX84 2022 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 LINC00854A0A1B0GVQ3 168 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 A0A1W2PRQ8 180 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 H3BQ06 376 aaPredicted RBP16.93■□□□□ 0.3
VIM-206ENST00000487938 PLD2O14939 933 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 LRRTM2O43300 516 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 DDX5P17844 614 aaKnown RBP16.93■□□□□ 0.3
VIM-206ENST00000487938 TIE1P35590 1138 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 NR4A2P43354 598 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 LASP1Q14847 261 aaKnown RBP16.93■□□□□ 0.3
VIM-206ENST00000487938 SYT14P1Q58G82 188 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 RTL10Q7L3V2 364 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 PHC2Q8IXK0 858 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 NT5DC2Q9H857 520 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 ANKRA2Q9H9E1 313 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 C3orf14Q9HBI5 128 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 IMP3Q9NV31 184 aaKnown RBP16.93■□□□□ 0.3
VIM-206ENST00000487938 TBC1D24Q9ULP9 559 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 SSR3Q9UNL2 185 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 PLEKHM1Q9Y4G2 1056 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 C4orf51C9J302 202 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 C1QTNF3-AMACRE9PGA6 284 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 SLITRK5O94991 958 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 CDRT1O95170 752 aa16.93■□□□□ 0.3
VIM-206ENST00000487938 NTN1O95631 604 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms