RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PIAS1O75925 651 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 GPR75O95800 540 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 CPN1P15169 458 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 CD1DP15813 335 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 GALNSP34059 522 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 IRF8Q02556 426 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 PCDH1Q08174 1060 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 BIKQ13323 160 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 FASTKD3Q14CZ7 662 aaKnown RBP13.96□□□□□ -0.17
MCF2L-228ENST00000487354 PAGE2BQ5JRK9 111 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 SULT1C3Q6IMI6 304 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 PRR22Q8IZ63 422 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 GCNT2Q8N0V5 402 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 TAGAPQ8N103 731 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 ZNF615Q8N8J6 731 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 C7orf57Q8NEG2 295 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 GRK7Q8WTQ7 553 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 RIT1Q92963 219 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 PIGTQ969N2 578 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 TP53INP1Q96A56 240 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 INTS12Q96CB8 462 aaKnown RBP13.96□□□□□ -0.17
MCF2L-228ENST00000487354 CTHRC1Q96CG8 243 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 PERPQ96FX8 193 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 ZFP3Q96NJ6 502 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 HS3ST6Q96QI5 342 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 KRT12Q99456 494 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 BDH2Q9BUT1 245 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 RHOJQ9H4E5 214 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 CNOT10Q9H9A5 744 aaKnown RBP13.96□□□□□ -0.17
MCF2L-228ENST00000487354 MS4A12Q9NXJ0 267 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 ASIC3Q9UHC3 531 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 USF3Q68DE3 2245 aa13.96□□□□□ -0.17
MCF2L-228ENST00000487354 A0A0A6YYD5 115 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 GLOD5A6NK44 160 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 DYRK3O43781 588 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 EEDO75530 441 aaKnown RBP13.95□□□□□ -0.18
MCF2L-228ENST00000487354 ACTL6AO96019 429 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 PCNAP12004 261 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 CYP4B1P13584 511 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 CPA2P48052 419 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 MASP1P48740 699 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 MGAT5Q09328 741 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 FUT7Q11130 342 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 RCAN2Q14206 197 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 CAPRIN1Q14444 709 aaKnown RBP13.95□□□□□ -0.18
MCF2L-228ENST00000487354 PPP1R7Q15435 360 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 ACKR1Q16570 336 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 MED27Q6P2C8 311 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 LRRC70Q7Z2Q7 622 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 PACS2Q86VP3 889 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 GPSM1Q86YR5 675 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 HGDQ93099 445 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 CMTM7Q96FZ5 175 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 PBKQ96KB5 322 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 WFIKKN1Q96NZ8 548 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 PELOQ9BRX2 385 aaKnown RBP13.95□□□□□ -0.18
MCF2L-228ENST00000487354 OR2B2Q9GZK3 357 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 CXorf21Q9HAI6 301 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 SNX15Q9NRS6 342 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 PHF11Q9UIL8 331 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 MTO1Q9Y2Z2 717 aaKnown RBP13.95□□□□□ -0.18
MCF2L-228ENST00000487354 PRR14LQ5THK1 2151 aa13.95□□□□□ -0.18
MCF2L-228ENST00000487354 B4DXG7 233 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 SNPHO15079 494 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 PHGDHO43175 533 aaKnown RBP13.94□□□□□ -0.18
MCF2L-228ENST00000487354 OR10H2O60403 315 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 CCNT2O60583 730 aaKnown RBP13.94□□□□□ -0.18
MCF2L-228ENST00000487354 AIFM1O95831 613 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 ABCB1P08183 1280 aaPredicted RBP13.94□□□□□ -0.18
MCF2L-228ENST00000487354 GPX3P22352 226 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 ABCD3P28288 659 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 BSGP35613 385 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 GFRA1P56159 465 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 FAM27E3Q08E93 113 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 HIST2H2ACQ16777 129 aaPredicted RBP13.94□□□□□ -0.18
MCF2L-228ENST00000487354 HIST2H2AA3Q6FI13 130 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 TMEM81Q6P7N7 255 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 ANGPTL8Q6UXH0 198 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 C22orf34Q6ZV56 151 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 ANKMY2Q8IV38 441 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 HUS1BQ8NHY5 278 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 ACTRT1Q8TDG2 376 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 UBTD2Q8WUN7 234 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 WNT2BQ93097 391 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 NODALQ96S42 347 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 CCL19Q99731 98 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 TM9SF2Q99805 663 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 CD244Q9BZW8 370 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 DDX47Q9H0S4 455 aaKnown RBP13.94□□□□□ -0.18
MCF2L-228ENST00000487354 PIGMQ9H3S5 423 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 UBTD1Q9HAC8 227 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 GALNT9Q9HCQ5 603 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 KLHL28Q9NXS3 571 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 PACSIN3Q9UKS6 424 aa13.94□□□□□ -0.18
MCF2L-228ENST00000487354 EIF3LQ9Y262 564 aaKnown RBP13.94□□□□□ -0.18
MCF2L-228ENST00000487354 A0A1W2PNV4 684 aa13.93□□□□□ -0.18
MCF2L-228ENST00000487354 HCRTR2O43614 444 aa13.93□□□□□ -0.18
MCF2L-228ENST00000487354 TGM6O95932 706 aa13.93□□□□□ -0.18
MCF2L-228ENST00000487354 SLC35E2BP0CK96 405 aa13.93□□□□□ -0.18
MCF2L-228ENST00000487354 SLC35E2P0CK97 266 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms