RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 LHFPL4Q7Z7J7 247 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 CUZD1Q86UP6 607 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 VASH2Q86V25 355 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 UNC5CLQ8IV45 518 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ZDHHC21Q8IVQ6 265 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 CHDHQ8NE62 594 aaPredicted RBP4.36□□□□□ -1.71
UPF3B-203ENST00000478840 DDHD1Q8NEL9 900 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 NFAM1Q8NET5 270 aaPredicted RBP4.36□□□□□ -1.71
UPF3B-203ENST00000478840 OR52M1Q8NGK5 317 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 FAM76AQ8TAV0 307 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ALKBH3Q96Q83 286 aaPredicted RBP4.36□□□□□ -1.71
UPF3B-203ENST00000478840 USP28Q96RU2 1077 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 TESK2Q96S53 571 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 CPXM1Q96SM3 734 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 CLEC7AQ9BXN2 247 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 PALMDQ9NP74 551 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 NLGN3Q9NZ94 848 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 ATP6V1HQ9UI12 483 aa4.36□□□□□ -1.71
UPF3B-203ENST00000478840 MRPS7Q9Y2R9 242 aaKnown RBP4.36□□□□□ -1.71
UPF3B-203ENST00000478840 SF3B1O75533 1304 aaKnown RBP eCLIP4.36□□□□□ -1.715e-6■■■■■ 61.2
UPF3B-203ENST00000478840 TRIM64CA6NLI5 447 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 ZNF724A8MTY0 619 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 HHLA1C9JL84 531 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 TOXO94900 526 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 OPN1MWP04001 364 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 OPN1MW2P0DN77 364 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 OPN1MW3P0DN78 364 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 ACTR1AP61163 376 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 SNRPD1P62314 119 aaKnown RBP4.35□□□□□ -1.71
UPF3B-203ENST00000478840 DHODHQ02127 395 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 CHIT1Q13231 466 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 GPM6BQ13491 265 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 MLF2Q15773 248 aaPredicted RBP4.35□□□□□ -1.71
UPF3B-203ENST00000478840 ZKSCAN8Q15776 578 aaPredicted RBP4.35□□□□□ -1.71
UPF3B-203ENST00000478840 CDKN3Q16667 212 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 ZNF876PQ49A33 203 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 KIAA1161Q6NSJ0 714 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 LEG1Q6P5S2 330 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 KIF6Q6ZMV9 814 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 ERASQ7Z444 233 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 FAM131BQ86XD5 332 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 RELL2Q8NC24 303 aaPredicted RBP4.35□□□□□ -1.71
UPF3B-203ENST00000478840 OR4F5Q8NH21 305 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 FBXO25Q8TCJ0 367 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 N4BP2L2Q92802 583 aaPredicted RBP4.35□□□□□ -1.71
UPF3B-203ENST00000478840 LRR1Q96L50 414 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 VSTM2LQ96N03 204 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 CASD1Q96PB1 797 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 VPS35Q96QK1 796 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 RPAP3Q9H6T3 665 aaPredicted RBP4.35□□□□□ -1.71
UPF3B-203ENST00000478840 SDF2L1Q9HCN8 221 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 TRPV5Q9NQA5 729 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 AGPAT5Q9NUQ2 364 aa4.35□□□□□ -1.71
UPF3B-203ENST00000478840 LOC105371242A0A075B767 164 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 A0A087X002 238 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 FBLL1A6NHQ2 334 aaKnown RBP4.34□□□□□ -1.71
UPF3B-203ENST00000478840 MPTX1A8MV57 137 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 WASH3PC4AMC7 463 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 SDHDO14521 159 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 TRAFD1O14545 582 aaPredicted RBP4.34□□□□□ -1.71
UPF3B-203ENST00000478840 MAGEB3O15480 346 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 GMFGO60234 142 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 NXPH2O95156 264 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 PRAMEF12O95522 483 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 SLC35G4P0C7Q5 338 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 NDST2P52849 883 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 NAPAP54920 295 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 SPIBQ01892 262 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 ENPP2Q13822 863 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 TRIP10Q15642 601 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 UPP1Q16831 310 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 MTHFSDQ2M296 383 aaKnown RBP4.34□□□□□ -1.71
UPF3B-203ENST00000478840 CEP55Q53EZ4 464 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 WLSQ5T9L3 541 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 BHLHB9Q6PI77 547 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 WASH2PQ6VEQ5 465 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 NOTCH2NLQ7Z3S9 236 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 NET1Q7Z628 596 aaPredicted RBP4.34□□□□□ -1.71
UPF3B-203ENST00000478840 CCDC36Q8IYA8 594 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 PYROXD2Q8N2H3 581 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 C9orf106Q8NAJ2 232 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 ICA1LQ8NDH6 482 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 STEAP2Q8NFT2 490 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 CNRIP1Q96F85 164 aaPredicted RBP4.34□□□□□ -1.71
UPF3B-203ENST00000478840 C4orf36Q96KX1 117 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 TSPAN18Q96SJ8 248 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 C19orf43Q9BQ61 176 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 ZSCAN5AQ9BUG6 496 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 TMEM117Q9H0C3 514 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 WDR13Q9H1Z4 485 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 KAT8Q9H7Z6 458 aaKnown RBP4.34□□□□□ -1.71
UPF3B-203ENST00000478840 CALHM2Q9HA72 323 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 Q9HAA7 133 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 KCNK13Q9HB14 408 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 PLEKHA3Q9HB20 300 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 LPAR2Q9HBW0 351 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 GPR83Q9NYM4 423 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 MBD2Q9UBB5 411 aa4.34□□□□□ -1.71
UPF3B-203ENST00000478840 PURGQ9UJV8 347 aaKnown RBP4.34□□□□□ -1.71
UPF3B-203ENST00000478840 IKZF3Q9UKT9 509 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms