RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 AK1P00568 194 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 NPPBP16860 134 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 FLYWCH1Q4VC44 716 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 RPL13AP3Q6NVV1 102 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 ACOT4Q8N9L9 421 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 OR52E1Q8NGJ3 308 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 SP140LQ9H930 580 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 SMURF1Q9HCE7 757 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 STUB1Q9UNE7 303 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 GPC6Q9Y625 555 aaPredicted RBP13.88□□□□□ -0.19
HDAC6-220ENST00000477528 TMEM202A6NGA9 273 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 PDCD5O14737 125 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 CASC3O15234 703 aaKnown RBP13.88□□□□□ -0.19
HDAC6-220ENST00000477528 GMFGO60234 142 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 SOX30O94993 753 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 F8A1P23610 371 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 ATP5A1P25705 553 aaKnown RBP13.88□□□□□ -0.19
HDAC6-220ENST00000477528 CERS1P27544 350 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 GABRA3P34903 492 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 PRDX1Q06830 199 aaKnown RBP13.88□□□□□ -0.19
HDAC6-220ENST00000477528 SLC35F1Q5T1Q4 408 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 PIWIL3Q7Z3Z3 882 aaKnown RBP13.88□□□□□ -0.19
HDAC6-220ENST00000477528 OR51G2Q8NGK0 314 aa13.88□□□□□ -0.19
HDAC6-220ENST00000477528 MTHFD2LQ9H903 347 aaPredicted RBP13.88□□□□□ -0.19
HDAC6-220ENST00000477528 TCRBV21S2A2A0A5A6 115 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 UNC119BA6NIH7 251 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 CD1EP15812 388 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 PSMB5P28074 263 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 GCGRP47871 477 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 TAS2R43P59537 309 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 MLIPQ5VWP3 458 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 ADIPOR2Q86V24 386 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 METTL21AQ8WXB1 218 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 SPATA6Q9NWH7 488 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 KIAA0355O15063 1070 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 APOL3O95236 402 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 MT-ND5P03915 603 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 IL1RNP18510 177 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 HK1P19367 917 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 MRPL19P49406 292 aaKnown RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 SIM1P81133 766 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 PON3Q15166 354 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 CCDC157Q569K6 752 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 PLAG1Q6DJT9 500 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 FIGLAQ6QHK4 219 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 ADAMTSL4Q6UY14 1074 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 C5orf34Q96MH7 638 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 PNO1Q9NRX1 252 aaKnown RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 PADI2Q9Y2J8 665 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 RBMX2Q9Y388 322 aaKnown RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 REM1O75628 298 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 TFPIP10646 304 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 CELP19835 753 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 GJA4P35212 333 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 FAUP35544 74 aaKnown RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 ATP12AP54707 1039 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 PITPNAQ00169 270 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 TBCEQ15813 527 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 FRMPD2BQ6IN97 320 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 ZNF517Q6ZMY9 492 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 CEP68Q76N32 757 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 CSNK1A1LQ8N752 337 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 PINK1Q9BXM7 581 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 ANKMY1Q9P2S6 941 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 OR51B4Q9Y5P0 310 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 SESN1Q9Y6P5 492 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 TNS1Q9HBL0 1735 aaKnown RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 HMGN2P05204 90 aaKnown RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 PSKH1P11801 424 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 NDUFV2P19404 249 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 SMN1Q16637 294 aaKnown RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 DECR1Q16698 335 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 TMEM52BQ4KMG9 183 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 ZNF550Q7Z398 422 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 HORMAD2Q8N7B1 307 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 ATP6V1C2Q8NEY4 427 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 B3GNT7Q8NFL0 401 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 SH3YL1Q96HL8 342 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-220ENST00000477528 CKLFQ9UBR5 152 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 ZNF225Q9UK10 706 aa13.87□□□□□ -0.19
HDAC6-220ENST00000477528 J3QLW9 94 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 HOXC11O43248 304 aaPredicted RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 CPNE3O75131 537 aaKnown RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 DBIP07108 87 aaKnown RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 ZNF19P17023 458 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 JUNBP17275 347 aaPredicted RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 UBXN2BQ14CS0 331 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 GKN2Q86XP6 184 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 OR4N5Q8IXE1 308 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 PRSS58Q8IYP2 241 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 OR10H5Q8NGA6 315 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 OR5D16Q8NGK9 328 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 SECISBP2Q96T21 854 aaKnown RBP13.86□□□□□ -0.19
HDAC6-220ENST00000477528 HDAC8Q9BY41 377 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 COMMD4Q9H0A8 199 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 PRSS16Q9NQE7 514 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 SLC2A4RGQ9NR83 387 aa13.86□□□□□ -0.19
HDAC6-220ENST00000477528 CNOT2Q9NZN8 540 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms