RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 NEK2P51955 445 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 RPS13P62277 151 aaKnown RBP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 IRX1P78414 480 aaPredicted RBP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 HMGCS1Q01581 520 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 SF3A3Q12874 501 aaKnown RBP eCLIP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 MAD2L1Q13257 205 aaPredicted RBP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 CUL3Q13618 768 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 DEFB134Q4QY38 66 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 CMPK2Q5EBM0 449 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 NXNQ6DKJ4 435 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 TMEM211Q6ICI0 200 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 OGFOD2Q6N063 350 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 Q6ZSR9 355 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 LARP4Q71RC2 724 aaKnown RBP eCLIP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 VN1R5Q7Z5H4 357 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 ANKRD53Q8N9V6 530 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 ZFP62Q8NB50 900 aaPredicted RBP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 NFAM1Q8NET5 270 aaPredicted RBP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 OR2T11Q8NH01 316 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 LILRB4Q8NHJ6 448 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 NT5CQ8TCD5 201 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 CREB3L4Q8TEY5 395 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 CMTM7Q96FZ5 175 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 PTCHD1Q96NR3 888 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 OR52B2Q96RD2 323 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 HBEGFQ99075 208 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 EBF4Q9BQW3 602 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 CENPKQ9BS16 269 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 MS4A8Q9BY19 250 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 TP63Q9H3D4 680 aaPredicted RBP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 WDR55Q9H6Y2 383 aaPredicted RBP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 AKTIPQ9H8T0 292 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 LRTM1Q9HBL6 345 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 NPDC1Q9NQX5 325 aaPredicted RBP8.43□□□□□ -1.06
SF3A1-206ENST00000471037 MRGBPQ9NV56 204 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 C1orf109Q9NX04 203 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 VPS29Q9UBQ0 182 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 SLC12A4Q9UP95 1085 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 TMED5Q9Y3A6 229 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 PTGDR2Q9Y5Y4 395 aa8.43□□□□□ -1.06
SF3A1-206ENST00000471037 GOLGA8QA0A0J9YX86 632 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 A0A1B0GTH9 108 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 GOLGA8OA6NCC3 632 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 URADA6NGE7 173 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 GOLGA8NF8WBI6 632 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 KLRC4-KLRK1H3BQV0 150 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 HS6ST1O60243 411 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 CCDC22O60826 627 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 B4GALT2O60909 372 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 DNAJB6O75190 326 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 DCTN3O75935 186 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 TPOP07202 933 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 SERPINA6P08185 405 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 MSX1P28360 303 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 MAPK1P28482 360 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 CHRNB4P30926 498 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 ARFIP1P53367 373 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 STXBP1P61764 594 aaKnown RBP8.42□□□□□ -1.06
SF3A1-206ENST00000471037 ERVK-8P63133 956 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 OLR1P78380 273 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 RGS1Q08116 209 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 AP5B1Q2VPB7 878 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 LSM12Q3MHD2 195 aaKnown RBP8.42□□□□□ -1.06
SF3A1-206ENST00000471037 TMEM35AQ53FP2 167 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 SPIN4Q56A73 249 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 SPDYAQ5MJ70 313 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 C6orf136Q5SQH8 315 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 DEPDC1Q5TB30 811 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 KHDRBS2Q5VWX1 349 aaKnown RBP8.42□□□□□ -1.06
SF3A1-206ENST00000471037 FAM219BQ5XKK7 198 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 ADNP2Q6IQ32 1131 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 ARHGAP11AQ6P4F7 1023 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 CHSY3Q70JA7 882 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 ABHD13Q7L211 337 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 SPATA19Q7Z5L4 167 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 SULF2Q8IWU5 870 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 DMRTC2Q8IXT2 367 aaPredicted RBP8.42□□□□□ -1.06
SF3A1-206ENST00000471037 APCDD1LQ8NCL9 501 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 SRFBP1Q8NEF9 429 aaKnown RBP8.42□□□□□ -1.06
SF3A1-206ENST00000471037 B3GNT7Q8NFL0 401 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 DEFB126Q9BYW3 111 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 PRDM9Q9NQV7 894 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 AHSPQ9NZD4 102 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.42□□□□□ -1.06
SF3A1-206ENST00000471037 HEY2Q9UBP5 337 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 PPIEQ9UNP9 301 aaKnown RBP8.42□□□□□ -1.06
SF3A1-206ENST00000471037 RNF6Q9Y252 685 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 HRH3Q9Y5N1 445 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 GTF3C1Q12789 2109 aa8.42□□□□□ -1.06
SF3A1-206ENST00000471037 SCN3AQ9NY46 2000 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 LRIT2A6NDA9 550 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 E9PBE3 544 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 UBDO15205 165 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 PEX1O43933 1283 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 PEX11AO75192 247 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 SEC22BO75396 215 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 MYO1DO94832 1006 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 TOXO94900 526 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 ETHE1O95571 254 aa8.41□□□□□ -1.06
SF3A1-206ENST00000471037 B3GALT4O96024 378 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms