RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 FBXL20Q96IG2 436 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 THOC3Q96J01 351 aaKnown RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 FER1L6-AS2Q96M78 137 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 PRPF18Q99633 342 aaKnown RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 SEMA4CQ9C0C4 833 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 ATP13A2Q9NQ11 1180 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 SIRT3Q9NTG7 399 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 ACSS1Q9NUB1 689 aaPredicted RBP13.76□□□□□ -0.21
COL9A3-209ENST00000469852 ATAD3AQ9NVI7 634 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 ARMCX1Q9P291 453 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 DTX4Q9Y2E6 619 aa13.76□□□□□ -0.21
COL9A3-209ENST00000469852 TRBV11-1A0A0K0K1C0 115 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 FAM234BA2RU67 622 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 A6NL46 340 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 NR5A2O00482 541 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 FCHO1O14526 889 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 MAN1A2O60476 641 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 FAM107AO95990 144 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 C1QCP02747 245 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 SERPINA7P05543 415 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 PGRP06401 933 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 CAPN3P20807 821 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 S100A3P33764 101 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 CCL11P51671 97 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 RRADP55042 308 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 MANFP55145 182 aaKnown RBP13.75□□□□□ -0.21
COL9A3-209ENST00000469852 SLC37A1P57057 533 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 HBA1P69905 142 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 AIMP2Q13155 320 aaKnown RBP13.75□□□□□ -0.21
COL9A3-209ENST00000469852 RCAN2Q14206 197 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 EXT1Q16394 746 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 DPY19L1Q2PZI1 675 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 FCRLBQ6BAA4 426 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 BLOC1S3Q6QNY0 202 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 APLFQ8IW19 511 aaPredicted RBP13.75□□□□□ -0.21
COL9A3-209ENST00000469852 C9orf40Q8IXQ3 194 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 KBTBD2Q8IY47 623 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 GALNT16Q8N428 558 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 ZNF615Q8N8J6 731 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 CLEC1AQ8NC01 280 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 OR1N1Q8NGS0 311 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 BRIX1Q8TDN6 353 aaKnown RBP13.75□□□□□ -0.21
COL9A3-209ENST00000469852 ZBED6CLQ96FA7 236 aaPredicted RBP13.75□□□□□ -0.21
COL9A3-209ENST00000469852 VPS50Q96JG6 964 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 MAGED4Q96JG8 741 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 ZBTB18Q99592 522 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 NPAS2Q99743 824 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 CXorf36Q9H7Y0 433 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 LIN28AQ9H9Z2 209 aaKnown RBP13.75□□□□□ -0.21
COL9A3-209ENST00000469852 MMP25Q9NPA2 562 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 MAPRE3Q9UPY8 281 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 ATMQ13315 3056 aa13.75□□□□□ -0.21
COL9A3-209ENST00000469852 GCN1Q92616 2671 aaKnown RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 TMEM200CA6NKL6 621 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 UPK1AO00322 258 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 RNASET2O00584 256 aaKnown RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 ABCB1P08183 1280 aaPredicted RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 ITGA3P26006 1051 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 CDKN2CP42773 168 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 ST13P50502 369 aaKnown RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 KLF10Q13118 480 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 MLC1Q15049 377 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 VPS26BQ4G0F5 336 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 B3GNTL1Q67FW5 361 aaPredicted RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 C16orf47Q6ZP98 133 aaPredicted RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 MTDHQ86UE4 582 aaKnown RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 CLEC4FQ8N1N0 589 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 SIRT6Q8N6T7 355 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 C7orf57Q8NEG2 295 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 OR52R1Q8NGF1 315 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 ZFP28Q8NHY6 868 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 THAP3Q8WTV1 239 aaPredicted RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 APOBEC4Q8WW27 367 aaKnown RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 OR5P2Q8WZ92 322 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 ELP4Q96EB1 424 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 VMP1Q96GC9 406 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 OR52E6Q96RD3 313 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 INPP5KQ9BT40 448 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 MYLK2Q9H1R3 596 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 SERHLQ9NQF3 203 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 SLC6A13Q9NSD5 602 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 FAM120CQ9NX05 1096 aaKnown RBP13.74□□□□□ -0.21
COL9A3-209ENST00000469852 CPAMD8Q8IZJ3 1885 aa13.74□□□□□ -0.21
COL9A3-209ENST00000469852 TNRC6AQ8NDV7 1962 aaKnown RBP13.73□□□□□ -0.21
COL9A3-209ENST00000469852 PRSS51A0A1B0GVH4 220 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 PLOD2O00469 737 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 PLOD3O60568 738 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 CPSF4O95639 269 aaKnown RBP13.73□□□□□ -0.21
COL9A3-209ENST00000469852 IL6P05231 212 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 GPC1P35052 558 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 CLCN2P51788 898 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 SOX8P57073 446 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 IRX1P78414 480 aaPredicted RBP13.73□□□□□ -0.21
COL9A3-209ENST00000469852 GAB1Q13480 694 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 TLR1Q15399 786 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 LINC00303Q3SY05 128 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 BORAQ6PGQ7 559 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 SLC2A7Q6PXP3 512 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 RNF111Q6ZNA4 994 aa13.73□□□□□ -0.21
COL9A3-209ENST00000469852 GPR155Q7Z3F1 870 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms