RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CBLCQ9ULV8 474 aa12.18□□□□□ -0.46
HMGB3-204ENST00000448905 CFL2Q9Y281 166 aa12.18□□□□□ -0.46
HMGB3-204ENST00000448905 A0A0A6YYD5 115 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 WASHC1A8K0Z3 465 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 CASKO14936 926 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 PGRMC2O15173 223 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 EEDO75530 441 aaKnown RBP12.17□□□□□ -0.46
HMGB3-204ENST00000448905 CLDN9O95484 217 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 IL18BPO95998 194 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 ACTL6AO96019 429 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 BSGP35613 385 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 DEKP35659 375 aaKnown RBP12.17□□□□□ -0.46
HMGB3-204ENST00000448905 CASP3P42574 277 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 XKP51811 444 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 FBXW4P57775 412 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 NHSL2Q5HYW2 709 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 C10orf62Q5T681 223 aaPredicted RBP12.17□□□□□ -0.46
HMGB3-204ENST00000448905 TTC19Q6DKK2 380 aaPredicted RBP12.17□□□□□ -0.46
HMGB3-204ENST00000448905 NUP54Q7Z3B4 507 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 RNF175Q8N4F7 328 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 RELL2Q8NC24 303 aaPredicted RBP12.17□□□□□ -0.46
HMGB3-204ENST00000448905 C17orf47Q8NEP4 570 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 OR1J4Q8NGS1 313 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 SH3GL2Q99962 352 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 METTL7AQ9H8H3 244 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 NEUROD4Q9HD90 331 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 TEX10Q9NXF1 929 aaPredicted RBP12.17□□□□□ -0.46
HMGB3-204ENST00000448905 FETUBQ9UGM5 382 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 C15orf41Q9Y2V0 281 aa12.17□□□□□ -0.46
HMGB3-204ENST00000448905 NF1P21359 2839 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 EEF1E1-BLOC1S5C9J1V9 151 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 EEF1E1O43324 174 aaKnown RBP12.16□□□□□ -0.46
HMGB3-204ENST00000448905 TMPRSS11DO60235 418 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 ERN1O75460 977 aaKnown RBP12.16□□□□□ -0.46
HMGB3-204ENST00000448905 PRKRAO75569 313 aaKnown RBP12.16□□□□□ -0.46
HMGB3-204ENST00000448905 CBR3O75828 277 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 LRATO95237 230 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 CYP4B1P13584 511 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 MTHFD2P13995 350 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 DRD2P14416 443 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 PORP16435 677 aaPredicted RBP12.16□□□□□ -0.46
HMGB3-204ENST00000448905 BMP7P18075 431 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 NT5EP21589 574 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 TACR1P25103 407 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 SSTR4P31391 388 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 MAGEA4P43358 317 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 NEK2P51955 445 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 PLTPP55058 493 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 GPX6P59796 221 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 ADAM8P78325 824 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 SORDQ00796 357 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 FUT7Q11130 342 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 FOXD4Q12950 439 aaPredicted RBP12.16□□□□□ -0.46
HMGB3-204ENST00000448905 DLG1Q12959 904 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 GTF2H2Q13888 395 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 PCBP2Q15366 365 aaKnown RBP eCLIP12.16□□□□□ -0.46
HMGB3-204ENST00000448905 DEFB113Q30KQ7 82 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 CCNYL2Q5T2Q4 361 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 TIGD3Q6B0B8 471 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 SLC30A6Q6NXT4 461 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 GTF2H2CQ6P1K8 395 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 ENPP6Q6UWR7 440 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 TMEM64Q6YI46 380 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 CMC1Q7Z7K0 106 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 CCDC25Q86WR0 208 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 ZNF441Q8N8Z8 693 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 L3MBTL4Q8NA19 623 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 NAXEQ8NCW5 288 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 ZPLD1Q8TCW7 415 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 FBF1Q8TES7 1133 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 TMEM41AQ96HV5 264 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 TM9SF2Q99805 663 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 ACBD3Q9H3P7 528 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 NDRG3Q9UGV2 375 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 SLC6A5Q9Y345 797 aa12.16□□□□□ -0.46
HMGB3-204ENST00000448905 MBD3L4A6NDZ8 208 aaPredicted RBP12.15□□□□□ -0.46
HMGB3-204ENST00000448905 MBD3L3A6NE82 208 aaPredicted RBP12.15□□□□□ -0.46
HMGB3-204ENST00000448905 GOLGA6L10A6NI86 522 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 MBD3L5A6NJ08 208 aaPredicted RBP12.15□□□□□ -0.46
HMGB3-204ENST00000448905 SEMA3DO95025 777 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 AIFM1O95831 613 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 C2P06681 752 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 KLK1P06870 262 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 CPN1P15169 458 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 ZNF136P52737 540 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 IFT88Q13099 833 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 SNTA1Q13424 505 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 GAB1Q13480 694 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 WIPI1Q5MNZ9 446 aaPredicted RBP12.15□□□□□ -0.46
HMGB3-204ENST00000448905 MROH9Q5TGP6 573 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 PAMR1Q6UXH9 720 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 BIVMQ86UB2 503 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 ZNF615Q8N8J6 731 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 SPATA4Q8NEY3 305 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 MBD3L2Q8NHZ7 208 aaPredicted RBP12.15□□□□□ -0.46
HMGB3-204ENST00000448905 LINC01560Q8TB33 94 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 TRPC4APQ8TEL6 797 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 KCTD4Q8WVF5 259 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 ISL2Q96A47 359 aa12.15□□□□□ -0.46
HMGB3-204ENST00000448905 ADIPOR1Q96A54 375 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms