RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 LEFTY2O00292 366 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 PRAMEF10O60809 474 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 CPEP16870 476 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 LAMA1P25391 3075 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 STK19P49842 368 aaPredicted RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 CAV3P56539 151 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 C21orf58P58505 322 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 RING1Q06587 406 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 RGS1Q08116 209 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 CDH18Q13634 790 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 SF3A2Q15428 464 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 GCNT6Q5T4J0 391 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 NCEH1Q6PIU2 408 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 TMIGD1Q6UXZ0 262 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 MACC1Q6ZN28 852 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 WDR53Q7Z5U6 358 aaPredicted RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 BCDIN3DQ7Z5W3 292 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 TAGAPQ8N103 731 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 CELF5Q8N6W0 485 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 TOR1AIP2Q8NFQ8 470 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 OR4A15Q8NGL6 344 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 TMEM43Q9BTV4 400 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 DSPPQ9NZW4 1301 aa8.12□□□□□ -1.11
HPS4-206ENST00000439453 YARS2Q9Y2Z4 477 aaKnown RBP8.12□□□□□ -1.11
HPS4-206ENST00000439453 PCP4L1A6NKN8 68 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ITGALP20701 1170 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ENPP1P22413 925 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 AOAHP28039 575 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ETV3P41162 512 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 RPS24P62847 133 aaKnown RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 NFATC2Q13469 925 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ELOAQ14241 798 aaKnown RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 MFSD13AQ14CX5 517 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 SUZ12Q15022 739 aaKnown RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 CDKL4Q5MAI5 379 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ZNF770Q6IQ21 691 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 TMEM65Q6PI78 240 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ZNF852Q6ZMS4 543 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 TIGD4Q8IY51 512 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ADGRG2Q8IZP9 1017 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 SYT14Q8NB59 555 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 OR52P1PQ8NH57 321 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ZNF431Q8TF32 576 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 GKN1Q9NS71 199 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 GPATCH2Q9NW75 528 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 VPS29Q9UBQ0 182 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 RUVBL1Q9Y265 456 aaKnown RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 SPIN1Q9Y657 262 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 ENPP4Q9Y6X5 453 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ARRDC5A6NEK1 342 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 PRR23AA6NEV1 266 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 HPGDSO60760 199 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 GPR37L1O60883 481 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 SOX14O95416 240 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 KLKB1P03952 638 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 IGFBP1P08833 259 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 ACRV1P26436 265 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 MVDP53602 400 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 CDH4P55283 916 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ALDH6A1Q02252 535 aaKnown RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 ACSM2AQ08AH3 577 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 IL18Q14116 193 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ANXA8L1Q5VT79 327 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ACSM2BQ68CK6 577 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 UBE2R2Q712K3 238 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 GHDCQ8N2G8 530 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 TMEM163Q8TC26 289 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 C1GALT1C1Q96EU7 318 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 SPNS1Q9H2V7 528 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ZNF282Q9UDV7 671 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 ING4Q9UNL4 249 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 SLC22A14Q9Y267 594 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 CDH10Q9Y6N8 788 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 CIB4A0PJX0 185 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ISM1B1AKI9 464 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 M0R296 226 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 RHOCP08134 193 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 OSMP13725 252 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 RHCEP18577 417 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ATF4P18848 351 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 ITPKAP23677 461 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 GSTM5P46439 218 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 SOX9P48436 509 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 RPS25P62851 125 aaKnown RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 CHIT1Q13231 466 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 ZNF267Q14586 743 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 FLYWCH1Q4VC44 716 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 KLHL22Q53GT1 634 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 HECTD3Q5T447 861 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 METAP1DQ6UB28 335 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 CASP12Q6UXS9 341 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 CDH24Q86UP0 819 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 LAPTM4BQ86VI4 370 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 HJURPQ8NCD3 748 aaPredicted RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 MSANTD3Q96H12 275 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 EVA1BQ9NVM1 165 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 KCTD5Q9NXV2 234 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 MRPL39Q9NYK5 338 aaKnown RBP8.11□□□□□ -1.11
HPS4-206ENST00000439453 REV1Q9UBZ9 1251 aa8.11□□□□□ -1.11
HPS4-206ENST00000439453 CRLS1Q9UJA2 301 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms