RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 ATG4BQ9Y4P1 393 aa7.15□□□□□ -1.26
VPS50-204ENST00000438395 TNPO3Q9Y5L0 923 aaKnown RBP7.15□□□□□ -1.26
VPS50-204ENST00000438395 CSMD2Q7Z408 3487 aa7.15□□□□□ -1.27
VPS50-204ENST00000438395 GTF3C1Q12789 2109 aa7.15□□□□□ -1.27
VPS50-204ENST00000438395 ZNF407Q9C0G0 2248 aa7.15□□□□□ -1.27
VPS50-204ENST00000438395 NAV3Q8IVL0 2385 aa7.15□□□□□ -1.27
VPS50-204ENST00000438395 A0A0G2JNJ9 132 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 CCDC189A1A4V9 331 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 GLOD5A6NK44 160 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 PRAMEF4O60810 478 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 DEAF1O75398 565 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 TRAPPC6AO75865 159 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 WISP3O95389 354 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 GPR75O95800 540 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 TBX6O95947 436 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 IGKV3-11P04433 115 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 FAM58BPP0C7Q3 252 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 SLC35E2BP0CK96 405 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 EPORP19235 508 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 BMP5P22003 454 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 ALDH18A1P54886 795 aaKnown RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 RPS13P62277 151 aaKnown RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 IGLV3-21P80748 117 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 MRPS25P82663 173 aaKnown RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 RPS6KA2Q15349 733 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 UAP1Q16222 522 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 CPSF6Q16630 551 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS50-204ENST00000438395 PFKFB4Q16877 469 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 HYAL4Q2M3T9 481 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 ZNF791Q3KP31 576 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 RIPPLY2Q5TAB7 128 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 DEPDC1Q5TB30 811 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 PRAMEF9Q5VWM5 478 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 LIPJQ5W064 366 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 TTC19Q6DKK2 380 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 ARSKQ6UWY0 536 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 CYS1Q717R9 158 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 TAOK1Q7L7X3 1001 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 PAGE2Q7Z2X7 111 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 GALNT12Q8IXK2 581 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 ZZZ3Q8IYH5 903 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 PM20D2Q8IYS1 436 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 ULK2Q8IYT8 1036 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 LRRC25Q8N386 305 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 OR10G3Q8NGC4 313 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 MRRFQ96E11 262 aaKnown RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 HSPBAP1Q96EW2 488 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 WWTR1Q9GZV5 400 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 CLEC4MQ9H2X3 399 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 KCNF1Q9H3M0 494 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 SEMA4BQ9NPR2 832 aaPredicted RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 CPSF2Q9P2I0 782 aaKnown RBP7.14□□□□□ -1.27
VPS50-204ENST00000438395 Q9UFV3 132 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 FAM215AQ9Y5M1 114 aa7.14□□□□□ -1.27
VPS50-204ENST00000438395 ABCA2Q9BZC7 2435 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 C2orf92A0A1B0GVN3 265 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 GOLGA6L10A6NI86 522 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 LRRC3CA6NJW4 275 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 EEF1E1-BLOC1S5C9J1V9 151 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 PLPP1O14494 284 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 TP73O15350 636 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 EEF1E1O43324 174 aaKnown RBP7.13□□□□□ -1.27
VPS50-204ENST00000438395 RAD51CO43502 376 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 UGDHO60701 494 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 CDH16O75309 829 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 GUCY1B2O75343 617 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 SNX4O95219 450 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 LRATO95237 230 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 AIFM1O95831 613 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 SLC35E2P0CK97 266 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 NT5EP21589 574 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 DNASE1P24855 282 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 PIK3R1P27986 724 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 DNAJA1P31689 397 aaKnown RBP7.13□□□□□ -1.27
VPS50-204ENST00000438395 PHBP35232 272 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 DEKP35659 375 aaKnown RBP7.13□□□□□ -1.27
VPS50-204ENST00000438395 MAGEA4P43358 317 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 SERPINB8P50452 374 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 ASCL1P50553 236 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 NR0B1P51843 470 aaKnown RBP7.13□□□□□ -1.27
VPS50-204ENST00000438395 DGKQP52824 942 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 ARFIP1P53367 373 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 HNRNPH2P55795 449 aaKnown RBP7.13□□□□□ -1.27
VPS50-204ENST00000438395 C2orf54Q08AI8 447 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 IFT88Q13099 833 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 CUL3Q13618 768 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 GTF2H2Q13888 395 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 RCAN2Q14206 197 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 SETDB1Q15047 1291 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 EBPQ15125 230 aaKnown RBP7.13□□□□□ -1.27
VPS50-204ENST00000438395 TESK1Q15569 626 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 SPRED3Q2MJR0 410 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 C10orf62Q5T681 223 aaPredicted RBP7.13□□□□□ -1.27
VPS50-204ENST00000438395 C18orf63Q68DL7 685 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 GTF2H2CQ6P1K8 395 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 ISCA2Q86U28 154 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 KIF18BQ86Y91 864 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 LACC1Q8IV20 430 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 SPATA4Q8NEY3 305 aa7.13□□□□□ -1.27
VPS50-204ENST00000438395 RHEBL1Q8TAI7 183 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms