RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TRMT10BQ6PF06 316 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 CILP2Q8IUL8 1156 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 MUS81Q96NY9 551 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ORAI3Q9BRQ5 295 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 MRPL17Q9NRX2 175 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 CPNE7Q9UBL6 633 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PPIEQ9UNP9 301 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 A0A0A6YYH2 397 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 A6NJ64 397 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CD63P08962 238 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 MMP7P09237 267 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 IRF1P10914 325 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 STK19P49842 368 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 CLDN8P56748 225 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 INCA1Q0VD86 236 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 GALNT2Q10471 571 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 TSSK4Q6SA08 328 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 RPL3LQ92901 407 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 SH3YL1Q96HL8 342 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 NUDT9Q9BW91 350 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 ABCG4Q9H172 646 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 DEFB129Q9H1M3 183 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 AMY2BP19961 511 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 BDKRB2P30411 391 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 HTR3AP46098 478 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 MRPS6P82932 125 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 SF1Q15637 639 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 SOHLH1Q5JUK2 328 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 GPR139Q6DWJ6 353 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CATSPERGQ6ZRH7 1159 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PPP1R35Q8TAP8 253 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 DUSP19Q8WTR2 217 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FAM136AQ96C01 138 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ADAD1Q96M93 576 aaKnown RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 CMTM3Q96MX0 182 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ABCB8Q9NUT2 735 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FBXO10Q9UK96 956 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 RPH3AQ9Y2J0 694 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 E9PAM4 449 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 MAGEB4O15481 346 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 TLX2O43763 284 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 LRATO95237 230 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 OSMP13725 252 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FOSL2P15408 326 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CA5AP35218 305 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 OR6Q1Q8NGQ2 317 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FBRSQ9HAH7 460 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 MANSC4A6NHS7 340 aaPredicted RBP6.89□□□□□ -1.31
VPS53-204ENST00000437048 J3QRK9 145 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ITGA5P08648 1049 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CNR1P21554 472 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 RAPSNQ13702 412 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 CEACAM20Q6UY09 585 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FBXL8Q96CD0 374 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 KAZALD1Q96I82 304 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 SLC22A12Q96S37 553 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ADAM18Q9Y3Q7 739 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ATRNL1Q5VV63 1379 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 hCG_2039718K7EN88 272 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ENGP17813 658 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 MAOBP27338 520 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 FAM214AQ32MH5 1076 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 HBMQ6B0K9 141 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 STEAP2Q8NFT2 490 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 TMEM174Q8WUU8 243 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 RAB7BQ96AH8 199 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 PWWP2AQ96N64 755 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 OR2M4Q96R27 311 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ZNF649Q9BS31 505 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 ZDHHC6Q9H6R6 413 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 SOHLH2Q9NX45 425 aa6.89□□□□□ -1.31
VPS53-204ENST00000437048 A6NIZ1 184 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 RFXAPO00287 272 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 RAB5AP20339 215 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 RAP1BP61224 184 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 RAP1AP62834 184 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 TPGS2Q68CL5 300 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 KDM8Q8N371 416 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 OR52J3Q8NH60 311 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS53-204ENST00000437048 MSI2Q96DH6 328 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 ISYNA1Q9NPH2 558 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 TDP1Q9NUW8 608 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 KCNIP1Q9NZI2 227 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 NKX1-2Q9UD57 310 aaPredicted RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 YTHDF2Q9Y5A9 579 aaKnown RBP6.88□□□□□ -1.31
VPS53-204ENST00000437048 GSRP00390 522 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ADRB2P07550 413 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 DUSP6Q16828 381 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 SLC18B1Q6NT16 456 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 OR9A4Q8NGU2 314 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 FANK1Q8TC84 345 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 CD244Q9BZW8 370 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 DKKL1Q9UK85 242 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 CCL15-CCL14A0A0B4J2E2 113 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 C13orf42A0A1B0GVH6 325 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 RCCD1A6NED2 376 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 A8MVJ9 347 aa6.88□□□□□ -1.31
VPS53-204ENST00000437048 ARNTLO00327 626 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms