RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 RBCK1Q9BYM8 510 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 ANKHQ9HCJ1 492 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 SMPD3Q9NY59 655 aaPredicted RBP19.84■□□□□ 0.77
PTPRF-207ENST00000436724 CLCA2Q9UQC9 943 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 TRIM64CA6NLI5 447 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 SRPX2O60687 465 aaPredicted RBP19.84■□□□□ 0.77
PTPRF-207ENST00000436724 CLIC3O95833 236 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 ALPLP05186 524 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 FHP07954 510 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 GLB1P16278 677 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 SEPHS1P49903 392 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 EPHA4P54764 986 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 DAG1Q14118 895 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 DUSP7Q16829 419 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 CEP68Q76N32 757 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 OR7G2Q8NG99 324 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 ZDHHC12Q96GR4 267 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 DDX18Q9NVP1 670 aaKnown RBP19.84■□□□□ 0.77
PTPRF-207ENST00000436724 IRAK4Q9NWZ3 460 aa19.84■□□□□ 0.77
PTPRF-207ENST00000436724 ATXN8OSP0DMR3 200 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 RXRGP48443 463 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 ALDH3A2P51648 485 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 ZIK1Q3SY52 487 aaPredicted RBP19.83■□□□□ 0.77
PTPRF-207ENST00000436724 KCTD21Q4G0X4 260 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 SNAP47Q5SQN1 464 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 FAM111BQ6SJ93 734 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 NUP43Q8NFH3 380 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 SFXN5Q8TD22 340 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 CYGBQ8WWM9 190 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 C8orf4Q9NR00 106 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 EPHA6Q9UF33 1036 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 BAG5Q9UL15 447 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 SH3GLB1Q9Y371 365 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 KCNE3Q9Y6H6 103 aa19.83■□□□□ 0.77
PTPRF-207ENST00000436724 TRIM64A6NGJ6 449 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 EMC8O43402 210 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 FOXS1O43638 330 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 SLC28A2O43868 658 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 CPMP14384 443 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 HOXB6P17509 224 aaKnown RBP19.83■□□□□ 0.76
PTPRF-207ENST00000436724 SOX18P35713 384 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 YAP1P46937 504 aaKnown RBP19.83■□□□□ 0.76
PTPRF-207ENST00000436724 PRR5P85299 388 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 TTC33Q6PID6 262 aaPredicted RBP19.83■□□□□ 0.76
PTPRF-207ENST00000436724 TMEM105Q8N8V8 129 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 TTC29Q8NA56 475 aaPredicted RBP19.83■□□□□ 0.76
PTPRF-207ENST00000436724 SDCCAG3Q96C92 435 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 OCEL1Q9H607 264 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 RUBCNLQ9H714 662 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 PDE7BQ9NP56 450 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 HCN3Q9P1Z3 774 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 SPACA6W5XKT8 324 aa19.83■□□□□ 0.76
PTPRF-207ENST00000436724 CHST10O43529 356 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 EPHA8P29322 1005 aaPredicted RBP19.82■□□□□ 0.76
PTPRF-207ENST00000436724 CSF2RBP32927 897 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 ZNF786Q8N393 782 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 METTL27Q8N6F8 245 aaPredicted RBP19.82■□□□□ 0.76
PTPRF-207ENST00000436724 OR56A1Q8NGH5 318 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 OR5K1Q8NHB7 308 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 FBXL20Q96IG2 436 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 TREX2Q9BQ50 279 aaPredicted RBP19.82■□□□□ 0.76
PTPRF-207ENST00000436724 SPRTNQ9H040 489 aaPredicted RBP19.82■□□□□ 0.76
PTPRF-207ENST00000436724 RAB33BQ9H082 229 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 NDUFAF4Q9P032 175 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 RSL24D1Q9UHA3 163 aaKnown RBP19.82■□□□□ 0.76
PTPRF-207ENST00000436724 PLCL2Q9UPR0 1127 aa19.82■□□□□ 0.76
PTPRF-207ENST00000436724 NINQ8N4C6 2090 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 ZBTB11O95625 1053 aaPredicted RBP19.81■□□□□ 0.76
PTPRF-207ENST00000436724 PPP2R2BQ00005 443 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 MAT1AQ00266 395 aaKnown RBP19.81■□□□□ 0.76
PTPRF-207ENST00000436724 FUT5Q11128 374 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 SYT16Q17RD7 645 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 BHLHB9Q6PI77 547 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 PIWIL3Q7Z3Z3 882 aaKnown RBP19.81■□□□□ 0.76
PTPRF-207ENST00000436724 HMGN2P46Q86SG4 172 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 PATL1Q86TB9 770 aaKnown RBP19.81■□□□□ 0.76
PTPRF-207ENST00000436724 SVOPLQ8N434 492 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 LZICQ8WZA0 190 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 OSBPL10Q9BXB5 764 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 C3orf14Q9HBI5 128 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 TUBA8Q9NY65 449 aaPredicted RBP19.81■□□□□ 0.76
PTPRF-207ENST00000436724 P2RX2Q9UBL9 471 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 PADI2Q9Y2J8 665 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 ADAMTS9Q9P2N4 1935 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 TRMUO75648 421 aaKnown RBP19.81■□□□□ 0.76
PTPRF-207ENST00000436724 CFIP05156 583 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 NR2F1P10589 423 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 PORP16435 677 aaPredicted RBP19.81■□□□□ 0.76
PTPRF-207ENST00000436724 KHKP50053 298 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 HLA-BQ31612 363 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 IFI44LQ53G44 452 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 SLC30A8Q8IWU4 369 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 OR2I1PQ8NGU4 316 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 ADAMTS16Q8TE57 1224 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 GIMAP5Q96F15 307 aa19.81■□□□□ 0.76
PTPRF-207ENST00000436724 A0A087WXM4 84 aa19.8■□□□□ 0.76
PTPRF-207ENST00000436724 HYKKA2RU49 373 aa19.8■□□□□ 0.76
PTPRF-207ENST00000436724 A8MU76 341 aa19.8■□□□□ 0.76
PTPRF-207ENST00000436724 PATE3B3GLJ2 98 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms