RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TCEANCQ8N8B7 351 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 KIAA1958Q8N8K9 716 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 FAM83FQ8NEG4 500 aaPredicted RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 GPR32P1Q8NGA4 272 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 FAR1Q8WVX9 515 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 CXorf40BQ96DE9 158 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 ALPK1Q96QP1 1244 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 GPA33Q99795 319 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 EFCAB11Q9BUY7 163 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 SGPP1Q9BX95 441 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 GABARAPL1Q9H0R8 117 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 EGLN3Q9H6Z9 239 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 SLC6A20Q9NP91 592 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 TOR4AQ9NXH8 423 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 YARS2Q9Y2Z4 477 aaKnown RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 PCDHGA6Q9Y5G7 932 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 C2orf16Q68DN1 1984 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 EP300Q09472 2414 aaPredicted RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 TCRBV21S2A2A0A5A6 115 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 FAM183AA6NL82 134 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 SSX4O60224 188 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 CBFA2T3O75081 653 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 UGT2B11O75310 529 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 SEC14L2O76054 403 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 SOX30O94993 753 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 ITGAMP11215 1152 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 FPR1P21462 350 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 GSTM2P28161 218 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 PEBP1P30086 187 aaKnown RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 PPP2R1BP30154 601 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 ADPRHP54922 357 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 CAV3P56539 151 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 DAB2P98082 770 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 ST3GAL4Q11206 333 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 SLC9A5Q14940 896 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 EXOSC7Q15024 291 aaKnown RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 PTGES3Q15185 160 aaKnown RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 PRRT3Q5FWE3 981 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 ZNF362Q5T0B9 420 aaPredicted RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 ZNF765Q7L2R6 523 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 RBM12BQ8IXT5 1001 aaKnown RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 ACOT4Q8N9L9 421 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 TMIEQ8NEW7 156 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 BBS10Q8TAM1 723 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 APH1BQ8WW43 257 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 CAPSLQ8WWF8 208 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 COQ8BQ96D53 544 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 CNRIP1Q96F85 164 aaPredicted RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 ZNF514Q96K75 400 aaPredicted RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 ZNF717Q9BY31 904 aaPredicted RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 DSN1Q9H410 356 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 NMNAT1Q9HAN9 279 aaPredicted RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 C14orf119Q9NWQ9 140 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 WSB2Q9NYS7 404 aaPredicted RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 APOBEC3BQ9UH17 382 aaKnown RBP7.91□□□□□ -1.14
CD44-208ENST00000428726 ZNF232Q9UNY5 417 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 ICKQ9UPZ9 632 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 AP1M2Q9Y6Q5 423 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 PIAS3Q9Y6X2 628 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 RP1P56715 2156 aa7.91□□□□□ -1.14
CD44-208ENST00000428726 CLDN25C9JDP6 229 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 TLX2O43763 284 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 JRKO75564 520 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 SEMG1P04279 462 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 ZNF888P0CJ79 500 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 CPMP14384 443 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 CBLP22681 906 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 GADD45AP24522 165 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 PTX3P26022 381 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 SLC16A1P53985 500 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 TMBIM6P55061 237 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 MAD2L1BPQ15013 274 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 AGERQ15109 404 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 CTF1Q16619 201 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 GXYLT1Q4G148 440 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 ZNF658BQ4V348 819 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 IFI44LQ53G44 452 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 GTF2IRD2BQ6EKJ0 949 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 PTCHD4Q6ZW05 846 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 GTF2IRD2Q86UP8 949 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 IQCHQ86VS3 1027 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 METTL4Q8N3J2 472 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 SETD9Q8NE22 299 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 OR6T1Q8NGN1 323 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 PIK3R3Q92569 461 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 WDR34Q96EX3 536 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 FAM210AQ96ND0 272 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 DACH2Q96NX9 599 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 ZNF300Q96RE9 604 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 TREX2Q9BQ50 279 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 APOOQ9BUR5 198 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 SFXN1Q9H9B4 322 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 PHPT1Q9NRX4 125 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 ZNF282Q9UDV7 671 aaPredicted RBP7.9□□□□□ -1.14
CD44-208ENST00000428726 KLF15Q9UIH9 416 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 RWDD3Q9Y3V2 267 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 PMF1-BGLAPU3KQ54 211 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 AHCTF1Q8WYP5 2266 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 C17orf113A0A1B0GUU1 675 aa7.9□□□□□ -1.14
CD44-208ENST00000428726 TRIM64BA6NI03 449 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms