RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 GPR89BP0CG08 455 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 MPC1LP0DKB6 136 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 PTGS2P35354 604 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 HLCSP50747 726 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 AKR1D1P51857 326 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 CTBP2P56545 445 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 RBPJQ06330 500 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.12□□□□□ -0.792e-6■■□□□ 13.5
TCOF1-204ENST00000427724 IER5LQ5T953 404 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 KANK2Q63ZY3 851 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF527Q8NB42 609 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 HDAC2Q92769 488 aaKnown RBP10.12□□□□□ -0.79
TCOF1-204ENST00000427724 RSPRY1Q96DX4 576 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 NOX1Q9Y5S8 564 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 SCN1AP35498 2009 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 UBFD1O14562 309 aaKnown RBP10.12□□□□□ -0.79
TCOF1-204ENST00000427724 AP1G1O43747 822 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 TPST2O60704 377 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 GIMD1P0DJR0 217 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 CTSKP43235 329 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 MCCD1P59942 119 aaPredicted RBP10.12□□□□□ -0.79
TCOF1-204ENST00000427724 CDC42P60953 191 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 EEF1A2Q05639 463 aaKnown RBP10.12□□□□□ -0.79
TCOF1-204ENST00000427724 SF3B4Q15427 424 aaKnown RBP eCLIP10.12□□□□□ -0.799e-7■■■■□ 20
TCOF1-204ENST00000427724 RAET1LQ5VY80 246 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 PLET1Q6UQ28 207 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 PLEKHG7Q6ZR37 379 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.12□□□□□ -0.79
TCOF1-204ENST00000427724 TMEM151BQ8IW70 566 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 HS3ST5Q8IZT8 346 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 CNIH3Q8TBE1 160 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 LRRC20Q8TCA0 184 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 SLC22A8Q8TCC7 542 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 RIT1Q92963 219 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 ABCB9Q9NP78 766 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 CRNNQ9UBG3 495 aaPredicted RBP10.12□□□□□ -0.79
TCOF1-204ENST00000427724 LOXL2Q9Y4K0 774 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 PCDHGA3Q9Y5H0 932 aa10.12□□□□□ -0.79
TCOF1-204ENST00000427724 CIB4A0PJX0 185 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 HYKKA2RU49 373 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 CLIC1O00299 241 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 MANBAO00462 879 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ARNTP27540 789 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 PSMB5P28074 263 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 HTR1EP28566 365 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 MNX1P50219 401 aaPredicted RBP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 GNG2P59768 71 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 GABREP78334 506 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 HSD11B2P80365 405 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 TIMM50Q3ZCQ8 353 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 PYDC2Q56P42 97 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ENPP6Q6UWR7 440 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 OR4K1Q8NGD4 311 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 CHPT1Q8WUD6 406 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF382Q96SR6 550 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 TTYH2Q9BSA4 534 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 COPS4Q9BT78 406 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 CD93Q9NPY3 652 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF282Q9UDV7 671 aaPredicted RBP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 PRODH2Q9UF12 536 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 DNMT3AQ9Y6K1 912 aaPredicted RBP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 HCRTR2O43614 444 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 EEDO75530 441 aaKnown RBP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 CDH12P55289 794 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 PTSQ03393 145 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 SPIN4Q56A73 249 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 PRSS36Q5K4E3 855 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 C6orf141Q5SZD1 244 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 TPRG1LQ5T0D9 272 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 PSD4Q8NDX1 1056 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ZFP90Q8TF47 636 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 TSPEARQ8WU66 669 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 MYEOVQ96EZ4 313 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 SLC30A3Q99726 388 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ELL3Q9HB65 397 aaPredicted RBP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 PAQR5Q9NXK6 330 aaPredicted RBP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF224Q9NZL3 707 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 TNFRSF11BO00300 401 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 MYL12BO14950 172 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ADAM23O75077 832 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 RFPL3O75679 317 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 SYNGR4O95473 234 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 TSPAN19P0C672 248 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ZNF41P51814 821 aaPredicted RBP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 ERVPABLB-1P60509 514 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 DEFB109BQ30KR1 87 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 KLHL12Q53G59 568 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 NXPE4Q6UWF7 544 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 CCBE1Q6UXH8 406 aaPredicted RBP10.11□□□□□ -0.79
TCOF1-204ENST00000427724 FUNDC1Q8IVP5 155 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 SFTPA1Q8IWL2 248 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 LNX2Q8N448 690 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 DTWD1Q8N5C7 304 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 KCNE4Q8WWG9 221 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 GPR78Q96P69 363 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 POPDC3Q9HBV1 291 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 TNFRSF12AQ9NP84 129 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 AGPAT4Q9NRZ5 378 aa10.11□□□□□ -0.79
TCOF1-204ENST00000427724 TAS2R9Q9NYW1 312 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms