RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CCNJQ5T5M9 372 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR4F3Q6IEY1 312 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR52E8Q6IFG1 317 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 SUSD1Q6UWL2 747 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF808Q8N4W9 903 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF675Q8TD23 568 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 NAT6Q93015 286 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CGREF1Q99674 301 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 RBCK1Q9BYM8 510 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR10A5Q9H207 317 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR10A2Q9H208 303 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 DCSTAMPQ9H295 470 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CUTCQ9NTM9 273 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 DECR2Q9NUI1 292 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OXSMQ9NWU1 459 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 KIF13AQ9H1H9 1805 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 TRBV2A0A0J9YWF9 115 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OLFM2O95897 454 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 HNRNPH3P31942 346 aaKnown RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ALDH3B2P48448 385 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 TAS2R20P59543 309 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 PRPS1P60891 318 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 LYSMD4Q5XG99 296 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 HS3ST5Q8IZT8 346 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR13C4Q8NGS5 318 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 C1orf74Q96LT6 269 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 SLC6A16Q9GZN6 736 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 NLE1Q9NVX2 485 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 NDUFAF4Q9P032 175 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 GXYLT2A0PJZ3 443 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 RNF212BA8MTL3 300 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 C9IYK1 514 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 MANBAO00462 879 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 FAAHO00519 579 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF780AO75290 641 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 MTX2O75431 263 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CREG1O75629 220 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 TBX18O95935 607 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 HLA-EP13747 358 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ADRB3P13945 408 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 EMX2Q04743 252 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 PPA1Q15181 289 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 STEAP3Q658P3 488 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM205Q6UW68 189 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 NLGN4XQ8N0W4 816 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR8K5Q8NH50 307 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 SGCZQ96LD1 299 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 COQ10BQ9H8M1 238 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CUEDC1Q9NWM3 386 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 LRFN1Q9P244 771 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 SLC22A31A6NKX4 558 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 STATHP02808 62 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 TM4SF1P30408 202 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 LUMP51884 338 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 DGKQP52824 942 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 TAS2R39P59534 338 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 GRB7Q14451 532 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 FAM205BPQ63HN1 556 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF695Q8IW36 515 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CHCHD4Q8N4Q1 142 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CNEP1R1Q8N9A8 125 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 GLIS3Q8NEA6 775 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR1J2Q8NGS2 313 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR2T4Q8NH00 348 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 TAMM41Q96BW9 452 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 SGTBQ96EQ0 304 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 SFXN2Q96NB2 322 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 LGALS13Q9UHV8 139 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 PRELID1Q9Y255 219 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 NALCNQ8IZF0 1738 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 GLOD5A6NK44 160 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 HEPACAM2A8MVW5 462 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 H7BY64 318 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 UBFD1O14562 309 aaKnown RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 HAPLN1P10915 354 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 KIR2DL3P43628 341 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CD83Q01151 205 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 PDE7AQ13946 482 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CNN3Q15417 329 aaKnown RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 STK11Q15831 433 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 BTBD16Q32M84 506 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 UGT2A3Q6UWM9 527 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 GALNT12Q8IXK2 581 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 FAM3CQ92520 227 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 PRAP1Q96NZ9 151 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 PFDN5Q99471 154 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 WACQ9BTA9 647 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 KLHL42Q9P2K6 505 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 LEFTY1O75610 366 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 CHRM5P08912 532 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 OR12D1P0DN82 309 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ACRV1P26436 265 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 IL3RAP26951 378 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 DIO3P55073 304 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF423Q2M1K9 1284 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 MANEALQ5VSG8 457 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ZBTB46Q86UZ6 589 aa6.56□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF689Q96CS4 500 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-204ENST00000423058 HSPBAP1Q96EW2 488 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms