RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CTAGE3PQ8IX95 158 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 TAGAPQ8N103 731 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 ZCCHC7Q8N3Z6 543 aaKnown RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 PPM1NQ8N819 430 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 FAM83FQ8NEG4 500 aaPredicted RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 STAG3L4Q8TBR4 150 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 UBE2E3Q969T4 207 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 ADIPOR1Q96A54 375 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 NTNG2Q96CW9 530 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 MRRFQ96E11 262 aaKnown RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 C18orf12Q96KH6 178 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 ART5Q96L15 291 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 CDK15Q96Q40 435 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 NODALQ96S42 347 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 CPNE1Q99829 537 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 TUBA1CQ9BQE3 449 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 YIPF4Q9BSR8 244 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 RBM24Q9BX46 236 aaKnown RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 NXF5Q9H1B4 397 aaKnown RBP7.39□□□□□ -1.23
VIM-202ENST00000421459 OR10A5Q9H207 317 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 CXorf21Q9HAI6 301 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.39□□□□□ -1.23
VIM-202ENST00000421459 MS4A12Q9NXJ0 267 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 QPCTLQ9NXS2 382 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 NUDT4Q9NZJ9 180 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 JKAMPQ9P055 326 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 PHF11Q9UIL8 331 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 PCDHGB3Q9Y5G1 929 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 WIF1Q9Y5W5 379 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 ACANP16112 2415 aa7.39□□□□□ -1.23
VIM-202ENST00000421459 MBD3L4A6NDZ8 208 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 MBD3L3A6NE82 208 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 MBD3L5A6NJ08 208 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 CD8B2A6NJW9 211 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 OR6C76A6NM76 312 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 C17orf51A8MQB3 221 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 KIAA1324LA8MWY0 1029 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 TP53I11O14683 189 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 SIAH2O43255 324 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 KERAO60938 352 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 LY6G6DO95868 133 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 KLK1P06870 262 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 ABCB1P08183 1280 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 INHBBP09529 407 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 LTA4HP09960 611 aaKnown RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 TMIGD3P0DMS9 266 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 TCP1P17987 556 aaKnown RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 NT5EP21589 574 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 PTX3P26022 381 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 CNTFP26441 200 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 ABCD3P28288 659 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 GP5P40197 560 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 PTGDSP41222 190 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 PIK3CBP42338 1070 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 XKP51811 444 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 DCAF7P61962 342 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 NKX6-1P78426 367 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 PCDH1Q08174 1060 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 MGAT2Q10469 447 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 SETDB1Q15047 1291 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 PCBP2Q15366 365 aaKnown RBP eCLIP7.38□□□□□ -1.23
VIM-202ENST00000421459 KBTBD12Q3ZCT8 623 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 UBAP2Q5T6F2 1119 aaKnown RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 HLA-DQA1Q5Y7H0 255 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 TIGD3Q6B0B8 471 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 ANGPTL8Q6UXH0 198 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 RPS27LQ71UM5 84 aaKnown RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 GOLGA7Q7Z5G4 137 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 BIVMQ86UB2 503 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 PACS2Q86VP3 889 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 CXorf67Q86X51 503 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 GALNT12Q8IXK2 581 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 DND1Q8IYX4 353 aaKnown RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 CENPLQ8N0S6 344 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 GCNT2Q8N0V5 402 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 MBD3L2Q8NHZ7 208 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 WDR20Q8TBZ3 569 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 UBTD2Q8WUN7 234 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 HGDQ93099 445 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 TP53INP1Q96A56 240 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 INTS12Q96CB8 462 aaKnown RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 HSPBAP1Q96EW2 488 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 MDFIQ99750 246 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 G6PC3Q9BUM1 346 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 DDX31Q9H8H2 851 aaKnown RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 METTL7AQ9H8H3 244 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 ZNF395Q9H8N7 513 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 ACTR8Q9H981 624 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 SERHLQ9NQF3 203 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 SNX15Q9NRS6 342 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 LYARQ9NX58 379 aaKnown RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 GALNT8Q9NY28 637 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 GRHL1Q9NZI5 618 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 C6orf203Q9P0P8 240 aaPredicted RBP7.38□□□□□ -1.23
VIM-202ENST00000421459 TXNDC16Q9P2K2 825 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 MAPRE3Q9UPY8 281 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 ANGPTL3Q9Y5C1 460 aa7.38□□□□□ -1.23
VIM-202ENST00000421459 ANKHD1Q8IWZ3 2542 aaKnown RBP7.37□□□□□ -1.23
VIM-202ENST00000421459 HMX2A2RU54 273 aa7.37□□□□□ -1.23
VIM-202ENST00000421459 SH3D21A4FU49 640 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms