RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 TRNT1Q96Q11 434 aaKnown RBP12.8□□□□□ -0.36
LIMS1-205ENST00000410093 OR2A14Q96R47 310 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 DGCR6LQ9BY27 220 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 FOXQ1Q9C009 403 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 CCDC90BQ9GZT6 254 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 TMEM168Q9H0V1 697 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 EVA1AQ9H8M9 152 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 FAM86C1Q9NVL1 165 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 IMPAD1Q9NX62 359 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 ACTR10Q9NZ32 417 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 TRPC4Q9UBN4 977 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 APOBEC3BQ9UH17 382 aaKnown RBP12.8□□□□□ -0.36
LIMS1-205ENST00000410093 ENPP5Q9UJA9 477 aa12.8□□□□□ -0.36
LIMS1-205ENST00000410093 SNRNP200O75643 2136 aaKnown RBP12.8□□□□□ -0.36
LIMS1-205ENST00000410093 A0A1W2PRQ8 180 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 PRAMEF25A6NGN4 478 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 CHURC1-FNTBB4DL54 471 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 BTN3A3O00478 584 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 SLC22A1O15245 554 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 B3GALT2O43825 422 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 BCL10O95999 233 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 OR12D1P0DN82 309 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 ACVR2AP27037 513 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 AK4P27144 223 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 KRT20P35900 424 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 CASP9P55211 416 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 RAB15P59190 212 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 ILKQ13418 452 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 DGCR6Q14129 220 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 PUM1Q14671 1186 aaKnown RBP eCLIP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 PRRT3Q5FWE3 981 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 FIGLAQ6QHK4 219 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 CD300LDQ6UXZ3 194 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 RD3Q7Z3Z2 195 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 VN1R4Q7Z5H5 301 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 SLC44A2Q8IWA5 706 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 C9orf43Q8TAL5 461 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 UTP15Q8TED0 518 aaKnown RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 FAR1Q8WVX9 515 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 XAGE5Q8WWM1 108 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 PMM1Q92871 262 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 CNRIP1Q96F85 164 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 Q96MT0 163 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 ZNF681Q96N22 645 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 COL21A1Q96P44 957 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 OR2A5Q96R48 311 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 SIGLEC11Q96RL6 698 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 NRTNQ99748 197 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 ACTRT3Q9BYD9 372 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 ANKRD19PQ9H560 264 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 NMNAT1Q9HAN9 279 aaPredicted RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 CACYBPQ9HB71 228 aaKnown RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 PLGRKTQ9HBL7 147 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 GPR27Q9NS67 375 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 CNOT2Q9NZN8 540 aaKnown RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 PTGFRNQ9P2B2 879 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 WARS2Q9UGM6 360 aaKnown RBP12.79□□□□□ -0.36
LIMS1-205ENST00000410093 PCDHGA10Q9Y5H3 936 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 F5P12259 2224 aa12.79□□□□□ -0.36
LIMS1-205ENST00000410093 CLCA1A8K7I4 914 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 PCDHGA12O60330 932 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 B4GALT2O60909 372 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ZNF217O75362 1048 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 WBP4O75554 376 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ERAL1O75616 437 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ATE1O95260 518 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 CDK4P11802 303 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 UGT2B7P16662 529 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 CD72P21854 359 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 CERS1P27544 350 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 FMO3P31513 532 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 IFNGR2P38484 337 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 UGT2B15P54855 530 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 UBE2IP63279 158 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 OLR1P78380 273 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 BTN3A2P78410 334 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ALDH6A1Q02252 535 aaKnown RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 NFATC3Q12968 1075 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 MAPK11Q15759 364 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 UBE2UQ5VVX9 321 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ZNF770Q6IQ21 691 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 TCTN3Q6NUS6 607 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 FBXO42Q6P3S6 717 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ZCCHC12Q6PEW1 402 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 SYT13Q7L8C5 426 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 C1orf210Q8IVY1 113 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 LRRC25Q8N386 305 aaPredicted RBP12.78□□□□□ -0.36
LIMS1-205ENST00000410093 AMER3Q8N944 861 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 TOR1AIP2Q8NFQ8 470 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 GPR32P1Q8NGA4 272 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 FAM81AQ8TBF8 368 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 RAB8BQ92930 207 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ELP4Q96EB1 424 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 CRELD1Q96HD1 420 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 ZFYVE21Q9BQ24 234 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 UCK2Q9BZX2 261 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 PCED1AQ9H1Q7 454 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 PALMDQ9NP74 551 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 LTB4R2Q9NPC1 389 aa12.78□□□□□ -0.36
LIMS1-205ENST00000410093 FKBP14Q9NWM8 211 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms