RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 RASGEF1CQ8N431 466 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 RASGEF1AQ8N9B8 481 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 OR4L1Q8NH43 312 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 LINC00615Q96LM1 132 aaPredicted RBP6.02□□□□□ -1.45
USP40-202ENST00000409945 C12orf66Q96MD2 445 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 POLDIP3Q9BY77 421 aaKnown RBP6.02□□□□□ -1.45
USP40-202ENST00000409945 MAP6D1Q9H9H5 199 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 IMP3Q9NV31 184 aaKnown RBP6.02□□□□□ -1.45
USP40-202ENST00000409945 RAP2CQ9Y3L5 183 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 KCNE2Q9Y6J6 123 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 ASXL3Q9C0F0 2248 aa6.02□□□□□ -1.45
USP40-202ENST00000409945 A0A087WV48 116 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 IGHV5-10-1A0A0J9YXX1 117 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 AGAP14A8MT82 685 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 LIN7AO14910 233 aaPredicted RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 NVLO15381 856 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 NDUFS3O75489 264 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 COILP38432 576 aaPredicted RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 CD151P48509 253 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 XIAPP98170 497 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 DMTNQ08495 405 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 OLIG2Q13516 323 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 PTPRCAPQ14761 206 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 RNPS1Q15287 305 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 LRRC8BQ6P9F7 803 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 EMBQ6PCB8 327 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 CEACAM20Q6UY09 585 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 OOSP2Q86WS3 158 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 PRIMA1Q86XR5 153 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 RAB42Q8N4Z0 105 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 EIF1ADQ8N9N8 165 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.01□□□□□ -1.45
USP40-202ENST00000409945 INTS12Q96CB8 462 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 PANX3Q96QZ0 392 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 AP1M1Q9BXS5 423 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 CCDC68Q9H2F9 335 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 MUC13Q9H3R2 512 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 FAM96AQ9H5X1 160 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 MRM3Q9HC36 420 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 PAPOLBQ9NRJ5 636 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 SLC39A1Q9NY26 324 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 ASIC3Q9UHC3 531 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 PSMD13Q9UNM6 376 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 SCN8AQ9UQD0 1980 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 URB1O60287 2271 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 FRYQ5TBA9 3013 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 TRBV5-4A0A0C4DH59 114 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 FAM237BA0A1B0GVD1 139 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 ARHGAP10A1A4S6 786 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 H3BMM5 538 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 STMND1H3BQB6 276 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 CCDC188H7C350 402 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 APOA4P06727 396 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 CD63P08962 238 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 THRAP10827 490 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 MLNP12872 115 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 ETS1P14921 441 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 POU1F1P28069 291 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 OAS2P29728 719 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 CAPZBP47756 277 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 KCNJ1P48048 391 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 CTSCP53634 463 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 UBE2IP63279 158 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 NFE2L1Q14494 772 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 NKAIN2Q5VXU1 208 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 PTRHD1Q6GMV3 140 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 IRGCQ6NXR0 463 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 CDC73Q6P1J9 531 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 PACS1Q6VY07 963 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 FAM83HQ6ZRV2 1179 aaPredicted RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 RRM2BQ7LG56 351 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 LRRC6Q86X45 466 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 ZNF547Q8IVP9 402 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 IFT20Q8IY31 132 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 PRELID2Q8N945 189 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 ASZ1Q8WWH4 475 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 ELMO1Q92556 727 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 KIAA1143Q96AT1 154 aaPredicted RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 NAF1Q96HR8 494 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 FOPNLQ96NB1 174 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 TGM7Q96PF1 710 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 DDA1Q9BW61 102 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 WWP1Q9H0M0 922 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 MVB12BQ9H7P6 319 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 FANCEQ9HB96 536 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 SLC40A1Q9NP59 571 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 PNRC2Q9NPJ4 139 aaKnown RBP6.01□□□□□ -1.45
USP40-202ENST00000409945 SLC23A2Q9UGH3 650 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 GNPTGQ9UJJ9 305 aa6.01□□□□□ -1.45
USP40-202ENST00000409945 IGLV3-16A0A075B6K0 115 aa6□□□□□ -1.45
USP40-202ENST00000409945 CCDC162PA2VCL2 907 aa6□□□□□ -1.45
USP40-202ENST00000409945 DPPA5A6NC42 116 aa6□□□□□ -1.45
USP40-202ENST00000409945 SDR42E2A6NKP2 422 aa6□□□□□ -1.45
USP40-202ENST00000409945 OR52A4PA6NMU1 304 aa6□□□□□ -1.45
USP40-202ENST00000409945 EFCAB7A8K855 629 aa6□□□□□ -1.45
USP40-202ENST00000409945 A8MU76 341 aa6□□□□□ -1.45
USP40-202ENST00000409945 CDRT15L2A8MXV6 281 aa6□□□□□ -1.45
USP40-202ENST00000409945 ZNF814B7Z6K7 855 aa6□□□□□ -1.45
USP40-202ENST00000409945 GAPDHSO14556 408 aaPredicted RBP6□□□□□ -1.45
USP40-202ENST00000409945 PRMT5O14744 637 aaPredicted RBP6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms