RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 OTUB1Q96FW1 271 aaPredicted RBP14.08□□□□□ -0.16
CBX3-202ENST00000396386 SMIM10Q96HG1 83 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 DHRS1Q96LJ7 313 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 C10orf90Q96M02 699 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 YIPF4Q9BSR8 244 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 BTBD2Q9BX70 525 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 KLHL25Q9H0H3 589 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 DUSP21Q9H596 190 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 TIMMDC1Q9NPL8 285 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 RASSF1Q9NS23 344 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 EVA1BQ9NVM1 165 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 AASSQ9UDR5 926 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 TMCC3Q9ULS5 477 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 PCDHGB1Q9Y5G3 927 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 SPTBN5Q9NRC6 3674 aaKnown RBP14.08□□□□□ -0.16
CBX3-202ENST00000396386 FFAR1O14842 300 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 ASNA1O43681 348 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 MRPS14O60783 128 aaKnown RBP14.08□□□□□ -0.16
CBX3-202ENST00000396386 OXSR1O95747 527 aaPredicted RBP14.08□□□□□ -0.16
CBX3-202ENST00000396386 CHRM4P08173 479 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 PCMT1P22061 227 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 GSSP48637 474 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 BLKP51451 505 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 DEFB134Q4QY38 66 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 FGD3Q5JSP0 725 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 OOSP2Q86WS3 158 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 SVOPQ8N4V2 548 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 ZNF655Q8N720 491 aaPredicted RBP14.08□□□□□ -0.16
CBX3-202ENST00000396386 FAM174AQ8TBP5 190 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 APH1BQ8WW43 257 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 IPCEF1Q8WWN9 437 aaPredicted RBP14.08□□□□□ -0.16
CBX3-202ENST00000396386 ELP4Q96EB1 424 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 NAA50Q9GZZ1 169 aaKnown RBP14.08□□□□□ -0.16
CBX3-202ENST00000396386 NMNAT1Q9HAN9 279 aaPredicted RBP14.08□□□□□ -0.16
CBX3-202ENST00000396386 PRDM9Q9NQV7 894 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 ERVK-18Q9QC07 812 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 RNF6Q9Y252 685 aa14.08□□□□□ -0.16
CBX3-202ENST00000396386 A0A0G2JPF8 293 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 HNRNPCL2B2RXH8 293 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 HNRNPCL3B7ZW38 293 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 FAAHO00519 579 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 RGS10O43665 173 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 PCDHGA12O60330 932 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 WBP4O75554 376 aaKnown RBP14.07□□□□□ -0.16
CBX3-202ENST00000396386 H1F0P07305 194 aaKnown RBP14.07□□□□□ -0.16
CBX3-202ENST00000396386 HNRNPCL4P0DMR1 293 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 PVRP15151 417 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 TLX1P31314 330 aaPredicted RBP14.07□□□□□ -0.16
CBX3-202ENST00000396386 SMIM11AP58511 58 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 CSNK2BP67870 215 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 LTB4RQ15722 352 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 GPAT3Q53EU6 434 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 FRMPD2BQ6IN97 320 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 Q6ZPB1 254 aaPredicted RBP14.07□□□□□ -0.16
CBX3-202ENST00000396386 P3H2Q8IVL5 708 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 RBM12BQ8IXT5 1001 aaKnown RBP14.07□□□□□ -0.16
CBX3-202ENST00000396386 DEPDC4Q8N2C3 294 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 FRMD1Q8N878 549 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 ZNF540Q8NDQ6 660 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 RAB2BQ8WUD1 216 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 GTPBP3Q969Y2 492 aaKnown RBP14.07□□□□□ -0.16
CBX3-202ENST00000396386 KLHDC7BQ96G42 594 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 SLC6A18Q96N87 628 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 OR7D2Q96RA2 312 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 RSPO3Q9BXY4 272 aaPredicted RBP14.07□□□□□ -0.16
CBX3-202ENST00000396386 DGCR6LQ9BY27 220 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 EQTNQ9NQ60 294 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 HRASLS2Q9NWW9 162 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 MS4A12Q9NXJ0 267 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 KCMF1Q9P0J7 381 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 DAPP1Q9UN19 280 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 SLC9A8Q9Y2E8 581 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 SCN3AQ9NY46 2000 aa14.07□□□□□ -0.16
CBX3-202ENST00000396386 LOC105369274A0A096LPK9 316 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 LOC102723532A0A0G2JNH3 316 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 TRBV4-1A0A0J9YWV2 114 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 ZNF99A8MXY4 864 aaPredicted RBP14.06□□□□□ -0.16
CBX3-202ENST00000396386 H0YGG7 62 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 ZSCAN9O15535 394 aaPredicted RBP14.06□□□□□ -0.16
CBX3-202ENST00000396386 ZNF217O75362 1048 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 UGT2B17O75795 530 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 ATE1O95260 518 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 ADAP00813 363 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 ALOX12P18054 663 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 ELAVL4P26378 380 aaKnown RBP14.06□□□□□ -0.16
CBX3-202ENST00000396386 LSSP48449 732 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 ARF3P61204 181 aaPredicted RBP14.06□□□□□ -0.16
CBX3-202ENST00000396386 SNRPNP63162 240 aaKnown RBP14.06□□□□□ -0.16
CBX3-202ENST00000396386 TEKQ02763 1124 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 NPTX1Q15818 432 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 SMN1Q16637 294 aaKnown RBP14.06□□□□□ -0.16
CBX3-202ENST00000396386 ZNF770Q6IQ21 691 aaPredicted RBP14.06□□□□□ -0.16
CBX3-202ENST00000396386 TCTN3Q6NUS6 607 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 FAM92BQ6ZTR7 304 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 SFTPA2Q8IWL1 248 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 OR4N4Q8N0Y3 316 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 OR4K14Q8NGD5 310 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 OR4D11Q8NGI4 311 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 KAT2AQ92830 837 aa14.06□□□□□ -0.16
CBX3-202ENST00000396386 C16orf58Q96GQ5 468 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms