RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 C7orf57Q8NEG2 295 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 ATP6V1C2Q8NEY4 427 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 TPD52L3Q96J77 140 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 KCNJ15Q99712 375 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 NIPSNAP1Q9BPW8 284 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 PPA2Q9H2U2 334 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 PIGUQ9H490 435 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 PPP1R3EQ9H7J1 279 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 HEXA-AS1Q9H8Q6 139 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SLC25A19Q9HC21 320 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SARS2Q9NP81 518 aaKnown RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 FZD3Q9NPG1 666 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 PRSS16Q9NQE7 514 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CLN6Q9NWW5 311 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 NDUFAF4Q9P032 175 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 NLKQ9UBE8 527 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 PPT2Q9UMR5 302 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 DLGAP4Q9Y2H0 992 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CLCA3PQ9Y6N3 262 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 STON1Q9Y6Q2 735 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CXorf51AA0A1B0GTR3 108 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CIB4A0PJX0 185 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SERTM1A2A2V5 107 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 LYRM1O43325 122 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 PRMT3O60678 531 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 TPST2O60704 377 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 C1QCP02747 245 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 TPOP07202 933 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SLC2A2P11168 524 aaPredicted RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 EPB42P16452 691 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 ZNF7P17097 686 aaPredicted RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 DDCP20711 480 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SERPINA4P29622 427 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 MTAPQ13126 283 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 PTGES3Q15185 160 aaKnown RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 DUOXA1Q1HG43 343 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 TMEM196Q5HYL7 178 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 RNLSQ5VYX0 342 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 METAP1DQ6UB28 335 aaPredicted RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 GDPD4Q6W3E5 623 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 Q6ZS52 159 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 ADGRG3Q86Y34 549 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 IL17RCQ8NAC3 791 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SORCS2Q96PQ0 1159 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 DOHHQ9BU89 302 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 MED18Q9BUE0 208 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 CPEB1Q9BZB8 566 aaKnown RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 RSPH9Q9H1X1 276 aaPredicted RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 PPIL3Q9H2H8 161 aaKnown RBP10.56□□□□□ -0.72
CUX1-204ENST00000393824 CD93Q9NPY3 652 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 WWOXQ9NZC7 414 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 COQ3Q9NZJ6 369 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SERGEFQ9UGK8 458 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 ENOPH1Q9UHY7 261 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 PHF11Q9UIL8 331 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 SLC6A14Q9UN76 642 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 ING4Q9UNL4 249 aa10.56□□□□□ -0.72
CUX1-204ENST00000393824 RPS10-NUDT3A0A1W2PQS6 291 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 TOR1AO14656 332 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 FABP7O15540 132 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 TSC22D2O75157 780 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 CSO75390 466 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 APODP05090 189 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 PTBP1P26599 531 aaKnown RBP eCLIP10.55□□□□□ -0.724e-11■■■■■ 42.8
CUX1-204ENST00000393824 NNMTP40261 264 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 ST8SIA6P61647 398 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 ZP2Q05996 745 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 ZNF33BQ06732 778 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 MLLT11Q13015 90 aaPredicted RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 NCF4Q15080 339 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 COL28A1Q2UY09 1125 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 GGTA1PQ4G0N0 100 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 GARNL3Q5VVW2 1013 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 MEDAGQ5VYS4 303 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 TRIQKQ629K1 86 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 GPR139Q6DWJ6 353 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 PARS2Q7L3T8 475 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 METTL3Q86U44 580 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 GLCCI1Q86VQ1 547 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 TMEM151BQ8IW70 566 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 LINC00518Q8N0U6 118 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 NELL1Q92832 810 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 ARRDC3Q96B67 414 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 CMTM7Q96FZ5 175 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 MAPKAP1Q9BPZ7 522 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 RANBP3Q9H6Z4 567 aaPredicted RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 ANKRA2Q9H9E1 313 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 PTTG3PQ9NZH4 202 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 IL36AQ9UHA7 158 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 CDH10Q9Y6N8 788 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 KPNA3O00505 521 aaPredicted RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 PCDH17O14917 1159 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 PI15O43692 258 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 SOCS5O75159 536 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 SERPINI2O75830 405 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 CLDN9O95484 217 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 RRASP10301 218 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 COL9A1P20849 921 aa10.55□□□□□ -0.72
CUX1-204ENST00000393824 APEX1P27695 318 aaKnown RBP10.55□□□□□ -0.72
CUX1-204ENST00000393824 KIR3DL1P43629 444 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms