RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CEP152O94986 1710 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ELK1P19419 428 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 HOXA1P49639 335 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 PSEN2P49810 448 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 KCNJ11Q14654 390 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 AMZ1Q400G9 498 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 PDLIM3Q53GG5 364 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 ARSJQ5FYB0 599 aaPredicted RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 KDELC1Q6UW63 502 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 OR8J3Q8NGG0 315 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ASB13Q8WXK3 278 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 FAM120CQ9NX05 1096 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 ABRACLQ9P1F3 81 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 ARID1AO14497 2285 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 PNPLA6Q8IY17 1366 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 FAAHO00519 579 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 MSTNO14793 375 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 FSTL4Q6MZW2 842 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 TSSK4Q6SA08 328 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 OR4N5Q8IXE1 308 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 LGI2Q8N0V4 545 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 GCNT2Q8N0V5 402 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 TRAM1L1Q8N609 369 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 BOLLQ8N9W6 283 aaKnown RBP8.39□□□□□ -1.07
LIG3-202ENST00000378526 GGHQ92820 318 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 CMKLR1Q99788 373 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 TMEM98Q9Y2Y6 226 aa8.39□□□□□ -1.07
LIG3-202ENST00000378526 TP53P04637 393 aaPredicted RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 PTAFRP25105 342 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 CLCNKBP51801 687 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 COL19A1Q14993 1142 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 KDF1Q8NAX2 398 aaPredicted RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 ST8SIA2Q92186 375 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 SUCNR1Q9BXA5 334 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 SLC12A9Q9BXP2 914 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 MMP28Q9H239 520 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 GAB2Q9UQC2 676 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 CDC42BPAQ5VT25 1732 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 F8VP50 259 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 FCN2Q15485 313 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 IL34Q6ZMJ4 242 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ERN2Q76MJ5 926 aaKnown RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 OR2D3Q8NGH3 330 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 THAP4Q8WY91 577 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ADAM7Q9H2U9 754 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 MCCC2Q9HCC0 563 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 HEBP2Q9Y5Z4 205 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 B3GALT1Q9Y5Z6 326 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 HLA-AP01891 365 aaKnown RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 RNH1P13489 461 aaKnown RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 SHMT1P34896 483 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 BEX3Q00994 111 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 PMS2P3Q13401 168 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ZNF239Q16600 458 aaKnown RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 CTXN3Q4LDR2 81 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ZFPM1Q8IX07 1006 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 SLC25A32Q9H2D1 315 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 C1orf123Q9NWV4 160 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 TESQ9UGI8 421 aaKnown RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 CDK5RAP2Q96SN8 1893 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 FAM221BA6H8Z2 402 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 LRRC72A6NJI9 287 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 RPLP1P05386 114 aaKnown RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 CETPP11597 493 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ENGP17813 658 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 TRHRP34981 398 aaPredicted RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 SRPXP78539 464 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 MAT1AQ00266 395 aaKnown RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 ZNF620Q6ZNG0 422 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ADPRHL1Q8NDY3 354 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 GPRC5AQ8NFJ5 357 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 OR4E2Q8NGC2 313 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 OR8U1Q8NH10 309 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ZNF461Q8TAF7 563 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 GIMAP1Q8WWP7 306 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 C1QTNF3-AMACRE9PGA6 284 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 B3GALT2O43825 422 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 SMIM6P0DI80 62 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 DRD5P21918 477 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ALAS2P22557 587 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 LIMK1P53667 647 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 TAS2R19P59542 299 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 PXDC1Q5TGL8 231 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 FUT10Q6P4F1 479 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 CAMKVQ8NCB2 501 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 OR8J1Q8NGP2 316 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ACDQ96AP0 544 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 BIRC7Q96CA5 298 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 OR2AG1Q9H205 316 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ZBTB20Q9HC78 741 aaPredicted RBP8.38□□□□□ -1.07
LIG3-202ENST00000378526 OXSMQ9NWU1 459 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ASTN1O14525 1302 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 LOC285095A0A1B0GVY8 99 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 TRIM77I1YAP6 450 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 EPHB6O15197 1021 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 ECI1P42126 302 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 BDKRB1P46663 353 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 GSK3BP49841 420 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 SELENOVP59797 346 aa8.38□□□□□ -1.07
LIG3-202ENST00000378526 CHRNEQ04844 493 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms