RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 SF3A2Q15428 464 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 GALNTL6Q49A17 601 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 RFTN2Q52LD8 501 aaPredicted RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 METTL21CQ5VZV1 264 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 PLAG1Q6DJT9 500 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 MED27Q6P2C8 311 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 FIGLAQ6QHK4 219 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 SPESP1Q6UW49 350 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 TMIGD1Q6UXZ0 262 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 TRPM8Q7Z2W7 1104 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 EFL1Q7Z2Z2 1120 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 RABEPKQ7Z6M1 372 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CLNKQ7Z7G1 428 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 KIRREL3Q8IZU9 778 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CHCHD4Q8N4Q1 142 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 MINDY1Q8N5J2 469 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CPSF7Q8N684 471 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 EID2Q8N6I1 236 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ARL10Q8N8L6 244 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 Q8N9G6 341 aaPredicted RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 OR4C6Q8NH72 309 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 HUS1BQ8NHY5 278 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 SELENOMQ8WWX9 145 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 APOLD1Q96LR9 279 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CATSPER2Q96P56 530 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 MACROD1Q9BQ69 325 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 AIF1LQ9BQI0 150 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CCDC106Q9BWC9 280 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ITPAQ9BY32 194 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 C11orf54Q9H0W9 315 aaPredicted RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 RHBGQ9H310 441 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ELOVL6Q9H5J4 265 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 RXFP3Q9NSD7 469 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ARL8BQ9NVJ2 186 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 SNX7Q9UNH6 387 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 BTBD3Q9Y2F9 522 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 TSC22D4Q9Y3Q8 395 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 PCDHGA5Q9Y5G8 931 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ENTPD2Q9Y5L3 495 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 COPG1Q9Y678 874 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 OTOGLQ3ZCN5 2332 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 UNC13CQ8NB66 2214 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ZNF292O60281 2723 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 MDC1Q14676 2089 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 EP300Q09472 2414 aaPredicted RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 MUC6Q6W4X9 2439 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 RALGAPA1Q6GYQ0 2036 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 IGHV1OR21-1A0A087WYE8 117 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 OR2A25A4D2G3 310 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 FAM90A18PA6NE21 464 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 FAM90A16PA6NEW6 464 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ERICH4A6NGS2 130 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 FAM90A9PA6NNJ1 464 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 FAM90A5PA8MXJ8 464 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 NPIPB8E9PQR5 432 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 FOXE1O00358 373 aaPredicted RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 SAP18O00422 153 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 EBAG9O00559 213 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CDX4O14627 284 aaPredicted RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 UBDO15205 165 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 YKT6O15498 198 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 RGS14O43566 566 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 OR1F1O43749 312 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 NUDT21O43809 227 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 VPS4BO75351 444 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 DCTN3O75935 186 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CER1O95813 267 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 GRPP07492 148 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 RETP07949 1114 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 FAM90A15PP0C7V4 464 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 FAM90A14PP0C7W9 464 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ZNF806P0C7X5 589 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 AMD1P17707 334 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ALOX12P18054 663 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 GPX3P22352 226 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 TGM1P22735 817 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 PRPH2P23942 346 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CD1CP29017 333 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ALDH4A1P30038 563 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ZFP36L2P47974 494 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 GFERP55789 205 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 CYP4F2P78329 520 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 RAE1P78406 368 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 EMX2Q04743 252 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 TBL3Q12788 808 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 KLF10Q13118 480 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 NR1D2Q14995 579 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ZSCAN26Q16670 478 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 HIST2H2ACQ16777 129 aaPredicted RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 SLC5A12Q1EHB4 618 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 AP5B1Q2VPB7 878 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 PAGE2BQ5JRK9 111 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 HIST2H2AA3Q6FI13 130 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 LAIR1Q6GTX8 287 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 RPUSD3Q6P087 351 aaKnown RBP3.36□□□□□ -1.87
MCF2-202ENST00000370573 GUSBP11Q6P575 273 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 DBX2Q6ZNG2 339 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 DGLUCYQ7Z3D6 616 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 VN1R4Q7Z5H5 301 aa3.36□□□□□ -1.87
MCF2-202ENST00000370573 ADCK2Q7Z695 626 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms