RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 OR8D2Q9GZM6 311 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 RASSF4Q9H2L5 321 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ZNF160Q9HCG1 818 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 LYARQ9NX58 379 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 ZNF639Q9UID6 485 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PHF11Q9UIL8 331 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ERVK-19Q9WJR5 959 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PCDHGA6Q9Y5G7 932 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 CSMD1Q96PZ7 3565 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 LOC102723996A0A087X1L8 192 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 TRBV5-3A0A0A0MS03 114 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PRSS51A0A1B0GVH4 220 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 A0A1W2PRB8 838 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 SRRM3A6NNA2 597 aaPredicted RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 B4DXG7 233 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 UBOX5O94941 541 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 IFNA16P05015 189 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ATP1B1P05026 303 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 RAB40ALP0C0E4 278 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 SLC35E2P0CK97 266 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 TLX1P31314 330 aaPredicted RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 KIR3DL1P43629 444 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 STT3AP46977 705 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 CD97P48960 835 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PRKAG1P54619 331 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 MANFP55145 182 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 SLC37A1P57057 533 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 STX1BP61266 288 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 SSPNQ14714 243 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 TUBB8Q3ZCM7 444 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 RABL3Q5HYI8 236 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 COLEC12Q5KU26 742 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 C6orf163Q5TEZ5 329 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 OR52E8Q6IFG1 317 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 CPEB2Q7Z5Q1 589 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 ZAR1Q86SH2 424 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 MRGPREQ86SM8 312 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ST13P4Q8IZP2 240 aaPredicted RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 SLC16A11Q8NCK7 471 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 OR5D16Q8NGK9 328 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 SNIP1Q8TAD8 396 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 SLC2A12Q8TD20 617 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 RIT1Q92963 219 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 RCN3Q96D15 328 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 FAM120BQ96EK7 910 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 RBM18Q96H35 190 aaKnown RBP3.75□□□□□ -1.81
LIG4-201ENST00000356922 CNTNAP3BQ96NU0 1288 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 LRRC37BQ96QE4 947 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 CNTNAP3Q9BZ76 1288 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 B3GNT4Q9C0J1 378 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ROGDIQ9GZN7 287 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 PIF1Q9H611 641 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 MS4A12Q9NXJ0 267 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 EHD3Q9NZN3 535 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 ZIM2Q9NZV7 527 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 FBXL4Q9UKA2 621 aa3.75□□□□□ -1.81
LIG4-201ENST00000356922 CSMD2Q7Z408 3487 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 NINQ8N4C6 2090 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 A0A1W2PP18 115 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 FAM234BA2RU67 622 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 A6NL46 340 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 CLDN4O14493 209 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 ZIC2O95409 532 aaPredicted RBP3.74□□□□□ -1.81
LIG4-201ENST00000356922 PDGFAP04085 211 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 ITGAMP11215 1152 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 COX4I1P13073 169 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 NT5EP21589 574 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 CPOXP36551 454 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 MRPL19P49406 292 aaKnown RBP3.74□□□□□ -1.81
LIG4-201ENST00000356922 RNF144AP50876 292 aaPredicted RBP3.74□□□□□ -1.81
LIG4-201ENST00000356922 RPS15P62841 145 aaKnown RBP3.74□□□□□ -1.81
LIG4-201ENST00000356922 SLC25A3Q00325 362 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 SQLEQ14534 574 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 IRAK1BP1Q5VVH5 260 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 PAPD4Q6PIY7 484 aaKnown RBP3.74□□□□□ -1.81
LIG4-201ENST00000356922 IKBIPQ70UQ0 350 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 CCDC197Q8NCU1 140 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 C16orf52Q8NHV5 167 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 KCNE4Q8WWG9 221 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 METTL21AQ8WXB1 218 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 KLHDC3Q9BQ90 382 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 SIKE1Q9BRV8 207 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 CNPPD1Q9BV87 410 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 GPR87Q9BY21 358 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 RTN4RQ9BZR6 473 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 EPS8L2Q9H6S3 715 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 EQTNQ9NQ60 294 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 ANKRD10Q9NXR5 420 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 SNX8Q9Y5X2 465 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 COL6A6A6NMZ7 2263 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 ZNF462Q96JM2 2506 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 CCDC154A6NI56 674 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 C21orf140B9A014 251 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 ANKRD65E5RJM6 399 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 AIM2O14862 343 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 PSMG1O95456 288 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 IGKV1D-16P01601 117 aa3.74□□□□□ -1.81
LIG4-201ENST00000356922 HMGN2P05204 90 aaKnown RBP3.74□□□□□ -1.81
LIG4-201ENST00000356922 SNRPB2P08579 225 aaKnown RBP3.74□□□□□ -1.81
LIG4-201ENST00000356922 CT45A8P0DMV1 189 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms