RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 MRPL19P49406 292 aaKnown RBP20.6■□□□□ 0.89
SHMT1-203ENST00000354098 SLC37A1P57057 533 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 DUSP8Q13202 625 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 C6orf163Q5TEZ5 329 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 THAP3Q8WTV1 239 aaPredicted RBP20.6■□□□□ 0.89
SHMT1-203ENST00000354098 ART5Q96L15 291 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 ZBTB18Q99592 522 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 NPAS2Q99743 824 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 DEFB126Q9BYW3 111 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 NSRP1Q9H0G5 558 aaKnown RBP20.6■□□□□ 0.89
SHMT1-203ENST00000354098 LIN28AQ9H9Z2 209 aaKnown RBP20.6■□□□□ 0.89
SHMT1-203ENST00000354098 TRIM33Q9UPN9 1127 aa20.6■□□□□ 0.89
SHMT1-203ENST00000354098 ATMQ13315 3056 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 NME6O75414 186 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-203ENST00000354098 CBX7O95931 251 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 S100A3P33764 101 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 MC3RP41968 323 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 CDK9P50750 372 aaKnown RBP20.59■□□□□ 0.89
SHMT1-203ENST00000354098 RHDQ02161 417 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 METTL21CQ5VZV1 264 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 H3F3CQ6NXT2 135 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 JMJD6Q6NYC1 403 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-203ENST00000354098 HSDL2Q6YN16 418 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 ANKRD46Q86W74 232 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 C9orf40Q8IXQ3 194 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 CLECL1Q8IZS7 167 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 ZNF615Q8N8J6 731 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 GLB1L3Q8NCI6 653 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-203ENST00000354098 MAGED4Q96JG8 741 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 ARHGAP9Q9BRR9 750 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 OR10A5Q9H207 317 aa20.59■□□□□ 0.89
SHMT1-203ENST00000354098 C6orf47O95873 294 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 ATP4BP51164 291 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 RNF4P78317 190 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 SQLEQ14534 574 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 DPY19L1Q2PZI1 675 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 FHL5Q5TD97 284 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 IRAK1BP1Q5VVH5 260 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 RNF111Q6ZNA4 994 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 C16orf47Q6ZP98 133 aaPredicted RBP20.58■□□□□ 0.89
SHMT1-203ENST00000354098 FUNDC1Q8IVP5 155 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 ZFP28Q8NHY6 868 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 ELP4Q96EB1 424 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 ABHD17AQ96GS6 310 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 SLC25A23Q9BV35 468 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 EPN3Q9H201 632 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 ZBTB20Q9HC78 741 aaPredicted RBP20.58■□□□□ 0.89
SHMT1-203ENST00000354098 BCAP29Q9UHQ4 241 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 ERVK-11Q9UQG0 969 aa20.58■□□□□ 0.89
SHMT1-203ENST00000354098 DOCK10Q96BY6 2186 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 TMEM200CA6NKL6 621 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 K7EM74 188 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 SNX3O60493 162 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 PGRP06401 933 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 GPC1P35052 558 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 ST13P50502 369 aaKnown RBP20.58■□□□□ 0.88
SHMT1-203ENST00000354098 POLR2JP52435 117 aaKnown RBP20.58■□□□□ 0.88
SHMT1-203ENST00000354098 AP2B1P63010 937 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 MLC1Q15049 377 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 NATD1Q8N6N6 113 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 NBEAQ8NFP9 2946 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 OR52R1Q8NGF1 315 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 OR5P2Q8WZ92 322 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 CCDC167Q9P0B6 97 aa20.58■□□□□ 0.88
SHMT1-203ENST00000354098 CACNA1GO43497 2377 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 UPK1AO00322 258 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 PLOD2O00469 737 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 PLOD3O60568 738 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 SHOX2O60902 331 aaPredicted RBP20.57■□□□□ 0.88
SHMT1-203ENST00000354098 ZFAND5O76080 213 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 ABCB1P08183 1280 aaPredicted RBP20.57■□□□□ 0.88
SHMT1-203ENST00000354098 SOX11P35716 441 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 AGAP7PQ5VUJ5 663 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 TCTN3Q6NUS6 607 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 EXD3Q8N9H8 876 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 OR7G1Q8NGA0 311 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 C16orf52Q8NHV5 167 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 AGAP4Q96P64 663 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 CDCP1Q9H5V8 836 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 SIRT3Q9NTG7 399 aaPredicted RBP20.57■□□□□ 0.88
SHMT1-203ENST00000354098 DTX4Q9Y2E6 619 aa20.57■□□□□ 0.88
SHMT1-203ENST00000354098 PRSS51A0A1B0GVH4 220 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 FAM234BA2RU67 622 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 MKRN2OSH3BPM6 223 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 RNASET2O00584 256 aaKnown RBP20.56■□□□□ 0.88
SHMT1-203ENST00000354098 CFLARO15519 480 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 PDGFAP04085 211 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 EMDP50402 254 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 HBA1P69905 142 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 KCNAB2Q13303 367 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 AGKQ53H12 422 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 PCSK4Q6UW60 755 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 LINC00696Q6ZRV3 163 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 RPS19BP1Q86WX3 136 aaKnown RBP20.56■□□□□ 0.88
SHMT1-203ENST00000354098 VPS33AQ96AX1 596 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 OR52E6Q96RD3 313 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 TRIM4Q9C037 500 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 CXorf36Q9H7Y0 433 aa20.56■□□□□ 0.88
SHMT1-203ENST00000354098 PCDHGA9Q9Y5G4 932 aaKnown RBP20.56■□□□□ 0.88
SHMT1-203ENST00000354098 CACNA1BQ00975 2339 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms