RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ZBTB48P10074 688 aaPredicted RBP12.08□□□□□ -0.47
COL6A3-203ENST00000353578 HOXA9P31269 272 aa12.08□□□□□ -0.47
COL6A3-203ENST00000353578 HBG1P69891 147 aa12.08□□□□□ -0.47
COL6A3-203ENST00000353578 HBG2P69892 147 aa12.08□□□□□ -0.47
COL6A3-203ENST00000353578 ZNF792Q3KQV3 632 aa12.08□□□□□ -0.47
COL6A3-203ENST00000353578 CLEC12AQ5QGZ9 265 aa12.08□□□□□ -0.47
COL6A3-203ENST00000353578 OR13C2Q8NGS9 318 aa12.08□□□□□ -0.47
COL6A3-203ENST00000353578 SLC39A7Q92504 469 aa12.08□□□□□ -0.47
COL6A3-203ENST00000353578 HAS1Q92839 578 aa12.08□□□□□ -0.47
COL6A3-203ENST00000353578 ROBO2Q9HCK4 1378 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 EIF3FO00303 357 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 ECI2O75521 394 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 UNGP13051 313 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 B3GLCTQ6Y288 498 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 ABHD13Q7L211 337 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 TEX26Q8N6G2 289 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 DDX1Q92499 740 aaKnown RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 PCDHB14Q9Y5E9 798 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CCNJQ5T5M9 372 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CEACAM20Q6UY09 585 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 TCTE3Q8IZS6 198 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 GORASP2Q9H8Y8 452 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CERS4Q9HA82 394 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 PLEKHA3Q9HB20 300 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 ZDHHC2Q9UIJ5 367 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 AMY2AP04746 511 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 TFPIP10646 304 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 FGF3P11487 239 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 ADRB3P13945 408 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 PPM1AP35813 382 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 ZNF691Q5VV52 312 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 RPL3LQ92901 407 aaKnown RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 TMEM18Q96B42 140 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 BRINP2Q9C0B6 783 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CACNB4O00305 520 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 RHOP08100 348 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 MMP7P09237 267 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 GCAP28676 217 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 LRRC37A5PQ49AS3 106 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CARD16Q5EG05 197 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 TOR1AIP1Q5JTV8 583 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 RHBDF2Q6PJF5 856 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 DBF4BQ8NFT6 615 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CMASQ8NFW8 434 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 C22orf15Q8WYQ4 148 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 SEC16AO15027 2179 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 PAGE1O75459 146 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 RAB3DO95716 219 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 RAET1GQ6H3X3 334 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 ZDHHC14Q8IZN3 488 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 SLC16A10Q8TF71 515 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 SLC7A6Q92536 515 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 ULBP1Q9BZM6 244 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 PATZ1Q9HBE1 687 aaKnown RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 TIMM22Q9Y584 194 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 LRP5LA4QPB2 252 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CTHP32929 405 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 REEP5Q00765 189 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 LYRM7Q5U5X0 104 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 PTGES2Q9H7Z7 377 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 MYO7AQ13402 2215 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 EGFP01133 1207 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 CPN1P15169 458 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 NDUFS1P28331 727 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 SLAMF1Q13291 335 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 TUSC3Q13454 348 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 ZNF705AQ6ZN79 300 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 SLC43A2Q8N370 569 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 TRMT10AQ8TBZ6 339 aaKnown RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 NSMAFQ92636 917 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 GGHQ92820 318 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 EXOSC8Q96B26 276 aaKnown RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 AHCYL2Q96HN2 611 aaKnown RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 FAM46AQ96IP4 442 aaKnown RBP12.08□□□□□ -0.48
COL6A3-203ENST00000353578 OR51I1Q9H343 314 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 WDR45Q9Y484 360 aa12.08□□□□□ -0.48
COL6A3-203ENST00000353578 PSMD10O75832 226 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 PTAFRP25105 342 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ZNF440Q8IYI8 595 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ACO2Q99798 780 aaKnown RBP12.07□□□□□ -0.48
COL6A3-203ENST00000353578 FBXL3Q9UKT7 428 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 TSPAN11A1L157 253 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 NCBP2P52298 156 aaKnown RBP eCLIP12.07□□□□□ -0.48
COL6A3-203ENST00000353578 OPCMLQ14982 345 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ZC3H14Q6PJT7 736 aaKnown RBP12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ZFAND4Q86XD8 727 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 HORMAD2Q8N7B1 307 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 OR4C5Q8NGB2 326 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ZNF536O15090 1300 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 HSPB3Q12988 150 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 FXNQ16595 210 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 PCGF3Q3KNV8 242 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 DCAF12L1Q5VU92 463 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 RNF170Q96K19 258 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 MED17Q9NVC6 651 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 XRN1Q8IZH2 1706 aaKnown RBP12.07□□□□□ -0.48
COL6A3-203ENST00000353578 POMCP01189 267 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 ARP10275 920 aa12.07□□□□□ -0.48
COL6A3-203ENST00000353578 MAT2AP31153 395 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms