RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 FAAHO00519 579 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 SLC31A1O15431 190 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 RNGTTO60942 597 aaKnown RBP14.57□□□□□ -0.08
UPF3B-202ENST00000345865 SERPINB7O75635 380 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 RPLP0P05388 317 aaKnown RBP14.57□□□□□ -0.08
UPF3B-202ENST00000345865 DBTP11182 482 aaKnown RBP14.57□□□□□ -0.08
UPF3B-202ENST00000345865 DDX5P17844 614 aaKnown RBP14.57□□□□□ -0.08
UPF3B-202ENST00000345865 TARDBPQ13148 414 aaKnown RBP eCLIP14.57□□□□□ -0.08
UPF3B-202ENST00000345865 ZNF404Q494X3 552 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 FBXO43Q4G163 708 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 TMEM196Q5HYL7 178 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 TOR1AIP1Q5JTV8 583 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 SLX4IPQ5VYV7 408 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 PLAG1Q6DJT9 500 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 PODNL1Q6PEZ8 512 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 OR6T1Q8NGN1 323 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 DACH2Q96NX9 599 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 FCRL4Q96PJ5 515 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 GPA33Q99795 319 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 CDADC1Q9BWV3 514 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 CNOT2Q9NZN8 540 aaKnown RBP14.57□□□□□ -0.08
UPF3B-202ENST00000345865 DNAJC27Q9NZQ0 273 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 CES1P1Q9UKY3 287 aa14.57□□□□□ -0.08
UPF3B-202ENST00000345865 OXSR1O95747 527 aaPredicted RBP14.56□□□□□ -0.08
UPF3B-202ENST00000345865 ADPRHP54922 357 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 PPP2CBP62714 309 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 PPP2CAP67775 309 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 TUBA1BP68363 451 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 RELAQ04206 551 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 LRRC32Q14392 662 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 MED22Q15528 200 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 TRIM16LQ309B1 348 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 C12orf73Q69YU5 71 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 NIPAL1Q6NVV3 410 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 TMEM107Q6UX40 140 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 TUBA1AQ71U36 451 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 CRELD1Q96HD1 420 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 NEURL2Q9BR09 285 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 CHCHD6Q9BRQ6 235 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 FAIM2Q9BWQ8 316 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 POLR2J3Q9H1A7 115 aaKnown RBP14.56□□□□□ -0.08
UPF3B-202ENST00000345865 CTPS2Q9NRF8 586 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 PCDHGA4Q9Y5G9 962 aa14.56□□□□□ -0.08
UPF3B-202ENST00000345865 POM121BA6NF01 834 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 H3BN98 237 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 RFXAPO00287 272 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 KPNA4O00629 521 aaPredicted RBP14.55□□□□□ -0.08
UPF3B-202ENST00000345865 MPZL2O60487 215 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 NTSP30990 170 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 MAN2A2P49641 1150 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 XKP51811 444 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 C19orf48Q6RUI8 117 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 ZER1Q7Z7L7 766 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 ATCAYQ86WG3 371 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 IQCF1Q8N6M8 205 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 OR2L5Q8NG80 312 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 RASSF5Q8WWW0 418 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 FAM131CQ96AQ9 280 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 ZG16BQ96DA0 208 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 MGLLQ99685 303 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 PRR14Q9BWN1 585 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 RAB11FIP5Q9BXF6 653 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 CLEC2DQ9UHP7 191 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 CNOT3O75175 753 aaKnown RBP14.55□□□□□ -0.08
UPF3B-202ENST00000345865 LGI1O95970 557 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 COL9A1P20849 921 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 TGM1P22735 817 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 MMP11P24347 488 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 UGT2B15P54855 530 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 SNRPGP62308 76 aaKnown RBP14.55□□□□□ -0.08
UPF3B-202ENST00000345865 DNASE1L3Q13609 305 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 SSX1Q16384 188 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 TSTQ16762 297 aaKnown RBP14.55□□□□□ -0.08
UPF3B-202ENST00000345865 USP43Q70EL4 1123 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 ZNF367Q7RTV3 350 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 CLIP4Q8N3C7 705 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 WDR36Q8NI36 951 aaKnown RBP14.55□□□□□ -0.08
UPF3B-202ENST00000345865 Q96MT0 163 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 TRMT61BQ9BVS5 477 aaKnown RBP14.55□□□□□ -0.08
UPF3B-202ENST00000345865 RMI1Q9H9A7 625 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 BCL2L10Q9HD36 194 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 QPCTLQ9NXS2 382 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D29Q9UFV1 150 aa14.55□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3DA0A087WVF3 549 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3IA0A087WXS9 549 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3EA0A087X179 549 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3KA0A087X1G2 549 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 A0A1W2PRQ8 180 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 KRBA1A5PL33 1030 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3FA6NER0 549 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3LB9A6J9 549 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 CACNB4O00305 520 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-202ENST00000345865 ARHGAP33O14559 1287 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 CEP290O15078 2479 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 ADAM23O75077 832 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 UGT2B17O75795 530 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TBC1D3HP0C7X1 549 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 TNNI3P19429 210 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 AHRP35869 848 aa14.54□□□□□ -0.08
UPF3B-202ENST00000345865 CLDN2P57739 230 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms