RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MNX1P50219 401 aaPredicted RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 SRYQ05066 204 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 KLHL22Q53GT1 634 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 RPL13AP3Q6NVV1 102 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 FRRS1Q6ZNA5 592 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 GPAT4Q86UL3 456 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 LGI4Q8N135 537 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 SFXN2Q96NB2 322 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 TXLNGYQ9BZA5 131 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 PNPLA3Q9NST1 481 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 DNAJC15Q9Y5T4 150 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 LDB3O75112 727 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 CCL11P51671 97 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 CCL7P80098 99 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 PUM1Q14671 1186 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP54-201ENST00000339859 CLCA4Q14CN2 919 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 NEDD8Q15843 81 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 LACTB2Q53H82 288 aaPredicted RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 UNQ6126/PRO20091Q6UXV3 157 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 NAXDQ8IW45 347 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 OR52N2Q8NGI0 321 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 NXPE2Q96DL1 559 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 DHRS4Q9BTZ2 278 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 SEC61A2Q9H9S3 476 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 CD93Q9NPY3 652 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 CIB4A0PJX0 185 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 BLOC1S5-TXNDC5H3BN57 136 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 SERPINA3P01011 423 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 CSF2P04141 144 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 CEACAM5P06731 702 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 TACSTD2P09758 323 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 POU2F1P14859 743 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 GGT5P36269 586 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 HTR3AP46098 478 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 PPP3R1P63098 170 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 PCDH1Q08174 1060 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 MRPL28Q13084 256 aaKnown RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 FANK1Q8TC84 345 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 FAR1Q8WVX9 515 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 ATOH8Q96SQ7 321 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 DPH2Q9BQC3 489 aaPredicted RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 DUSP15Q9H1R2 295 aaPredicted RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 DLGAP2Q9P1A6 1054 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 ZNF624Q9P2J8 865 aaPredicted RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 ZNF229Q9UJW7 825 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 ATXN7L1Q9ULK2 861 aaPredicted RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 CASKO14936 926 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 AREL1O15033 823 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 TP73O15350 636 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 TNFSF14O43557 240 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 IFI30P13284 250 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 GSK3BP49841 420 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 SMSP52788 366 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 BHLHA9Q7RTU4 235 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 SLITRK4Q8IW52 837 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 UBQLNLQ8IYU4 475 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 OR9I1Q8NGQ6 314 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 SMPD3Q9NY59 655 aaPredicted RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 LRCH1Q9Y2L9 728 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 PTGDR2Q9Y5Y4 395 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 TDRD15B5MCY1 1934 aaKnown RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 BRCA1P38398 1863 aaKnown RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 SEC14L5O43304 696 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 C9P02748 559 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 STARD6P59095 220 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 MAT1AQ00266 395 aaKnown RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 ACVR1Q04771 509 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 CYP27C1Q4G0S4 372 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 SFT2D3Q587I9 215 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 SPRED2Q7Z698 418 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 SLC34A3Q8N130 599 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 METTL25Q8N6Q8 603 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 NANOS1Q8WY41 292 aaKnown RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 UCK2Q9BZX2 261 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 OR51V1Q9H2C8 321 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 CAB39Q9Y376 341 aaPredicted RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 H0YIV9 168 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 ALOX12BO75342 701 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 NXPH1P58417 271 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 DYNC1I2Q13409 638 aaKnown RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 TRIP6Q15654 476 aaKnown RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 KIAA1614Q5VZ46 1190 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 OR2T5Q6IEZ7 315 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 VRK3Q8IV63 474 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 METTL4Q8N3J2 472 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 OR2T29Q8NH02 315 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 MACROD1Q9BQ69 325 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 FAM117AQ9C073 453 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 MCTS1Q9ULC4 181 aaKnown RBP9.61□□□□□ -0.87
USP54-201ENST00000339859 SLC35A3Q9Y2D2 325 aa9.61□□□□□ -0.87
USP54-201ENST00000339859 FZD6O60353 706 aa9.6□□□□□ -0.87
USP54-201ENST00000339859 POU3F2P20265 443 aaPredicted RBP9.6□□□□□ -0.87
USP54-201ENST00000339859 MC3RP41968 323 aa9.6□□□□□ -0.87
USP54-201ENST00000339859 ZP2Q05996 745 aa9.6□□□□□ -0.87
USP54-201ENST00000339859 COX10Q12887 443 aa9.6□□□□□ -0.87
USP54-201ENST00000339859 COQ5Q5HYK3 327 aa9.6□□□□□ -0.87
USP54-201ENST00000339859 ABHD12BQ7Z5M8 362 aaPredicted RBP9.6□□□□□ -0.87
USP54-201ENST00000339859 RCBTB1Q8NDN9 531 aa9.6□□□□□ -0.87
USP54-201ENST00000339859 OR7G1Q8NGA0 311 aa9.6□□□□□ -0.87
USP54-201ENST00000339859 OSTF1Q92882 214 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms