RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 NCLNQ969V3 563 aa20.65■□□□□ 0.9
SDC3-202ENST00000339394 ANKRA2Q9H9E1 313 aa20.65■□□□□ 0.9
SDC3-202ENST00000339394 TAS2R9Q9NYW1 312 aa20.65■□□□□ 0.9
SDC3-202ENST00000339394 BTNL2Q9UIR0 455 aa20.65■□□□□ 0.9
SDC3-202ENST00000339394 A0A1W2PP18 115 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 DYTNA2CJ06 578 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 PLOD2O00469 737 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 CFLARO15519 480 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 PLOD3O60568 738 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 SLITRK5O94991 958 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 ABCB1P08183 1280 aaPredicted RBP20.64■□□□□ 0.9
SDC3-202ENST00000339394 CELA2AP08217 269 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 SNRPB2P08579 225 aaKnown RBP20.64■□□□□ 0.9
SDC3-202ENST00000339394 SSTR4P31391 388 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 MAPKAPK3Q16644 382 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 CLEC1AQ8NC01 280 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 PSMA8Q8TAA3 256 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 M1APQ8TC57 530 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 ART5Q96L15 291 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 CCDC115Q96NT0 180 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 NEUROD4Q9HD90 331 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 SERHLQ9NQF3 203 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 SIRT3Q9NTG7 399 aaPredicted RBP20.64■□□□□ 0.9
SDC3-202ENST00000339394 PCDHGB4Q9UN71 923 aa20.64■□□□□ 0.9
SDC3-202ENST00000339394 ACACBO00763 2458 aa20.64■□□□□ 0.89
SDC3-202ENST00000339394 ASPDHA6ND91 283 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 CBX7O95931 251 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 RRADP55042 308 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 LRRC74AQ0VAA2 488 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 TLR1Q15399 786 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 MSANTD1Q6ZTZ1 278 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 OR4A15Q8NGL6 344 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 ELP5Q8TE02 316 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 TSPEARQ8WU66 669 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 ERP27Q96DN0 273 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 PANX1Q96RD7 426 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 NUDT9Q9BW91 350 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 SEMA4CQ9C0C4 833 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 ING2Q9H160 280 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 CXorf36Q9H7Y0 433 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 RMND5AQ9H871 391 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 MMP25Q9NPA2 562 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 ATP13A2Q9NQ11 1180 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 COPS7AQ9UBW8 275 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 SNX8Q9Y5X2 465 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 LOC100653049A0A140TA62 436 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 UPK1AO00322 258 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 KRT34O76011 436 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 CPSF4O95639 269 aaKnown RBP20.63■□□□□ 0.89
SDC3-202ENST00000339394 CLPSP04118 112 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 CHAF1BQ13112 559 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 AIMP2Q13155 320 aaKnown RBP20.63■□□□□ 0.89
SDC3-202ENST00000339394 EXOSC7Q15024 291 aaKnown RBP20.63■□□□□ 0.89
SDC3-202ENST00000339394 FHL5Q5TD97 284 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 SLC2A7Q6PXP3 512 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 TREML1Q86YW5 311 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 OR2L13Q8N349 312 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 KIF2BQ8N4N8 673 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 OR7G1Q8NGA0 311 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 SNRNP27Q8WVK2 155 aaKnown RBP20.63■□□□□ 0.89
SDC3-202ENST00000339394 GTF2H4Q92759 462 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 VMP1Q96GC9 406 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 MAGED4Q96JG8 741 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 CNTNAP3BQ96NU0 1288 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 INPP5KQ9BT40 448 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 CNTNAP3Q9BZ76 1288 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 TRIM4Q9C037 500 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 OR10A5Q9H207 317 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 PTGFRNQ9P2B2 879 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 ZNF223Q9UK11 482 aaPredicted RBP20.63■□□□□ 0.89
SDC3-202ENST00000339394 NDUFAF1Q9Y375 327 aa20.63■□□□□ 0.89
SDC3-202ENST00000339394 A0A087WV62 115 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 SERPINA7P05543 415 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 CLCN2P51788 898 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 SLC37A1P57057 533 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 CXADRP78310 365 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 PAGE3Q5JUK9 113 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 KBTBD2Q8IY47 623 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 FITM2Q8N6M3 262 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 ZNF615Q8N8J6 731 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 OR52R1Q8NGF1 315 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 GOT1L1Q8NHS2 421 aaPredicted RBP20.62■□□□□ 0.89
SDC3-202ENST00000339394 SLC25A23Q9BV35 468 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 DDX18Q9NVP1 670 aaKnown RBP20.62■□□□□ 0.89
SDC3-202ENST00000339394 C19orf53Q9UNZ5 99 aaPredicted RBP20.62■□□□□ 0.89
SDC3-202ENST00000339394 KCNMB2Q9Y691 235 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 MGAQ8IWI9 3026 aa20.62■□□□□ 0.89
SDC3-202ENST00000339394 TPRP12270 2363 aaKnown RBP20.61■□□□□ 0.89
SDC3-202ENST00000339394 CAPN14A8MX76 684 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 RFXANKO14593 260 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 IFI6P09912 130 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 CDKN2CP42773 168 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 DUSP8Q13202 625 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 MAPRE2Q15555 327 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 RNF111Q6ZNA4 994 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 SNX32Q86XE0 403 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 FAM120BQ96EK7 910 aaKnown RBP20.61■□□□□ 0.89
SDC3-202ENST00000339394 ITCHQ96J02 903 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 NTMQ9P121 344 aa20.61■□□□□ 0.89
SDC3-202ENST00000339394 BCAP29Q9UHQ4 241 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms