RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ULK3Q6PHR2 472 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 C19orf48Q6RUI8 117 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CLEC9AQ6UXN8 241 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 KIAA0319LQ8IZA0 1049 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 GMCL1P1Q8NEA9 526 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MAPK15Q8TD08 544 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 ZBED6CLQ96FA7 236 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 LINGO1Q96FE5 620 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CELF6Q96J87 481 aaKnown RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 NECAB3Q96P71 396 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 SLC2A13Q96QE2 648 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MSTO1Q9BUK6 570 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 ALG8Q9BVK2 526 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 AMBRA1Q9C0C7 1298 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MS4A7Q9GZW8 240 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 RPS6KB2Q9UBS0 482 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 LOC285095A0A1B0GVY8 99 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 STBD1O95210 358 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 ALDOAP04075 364 aaKnown RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CYBBP04839 570 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 C8GP07360 202 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 INSRRP14616 1297 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 PTPRAP18433 802 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 ABCD3P28288 659 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 HTR2CP28335 458 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 GGT2P36268 569 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 SLC1A2P43004 574 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR1G1P47890 313 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MLLT11Q13015 90 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 IRF3Q14653 427 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 HLXQ14774 488 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF549Q6P9A3 640 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 NCEH1Q6PIU2 408 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 SSX7Q7RTT5 188 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 NLGN1Q8N2Q7 840 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CERS5Q8N5B7 392 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 NUDT10Q8NFP7 164 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 BPIFCQ8NFQ6 507 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CYP2W1Q8TAV3 490 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 DPF1Q92782 380 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 UPRTQ96BW1 309 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF845Q96IR2 970 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 JPH4Q96JJ6 628 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF668Q96K58 619 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 HRASLS5Q96KN8 279 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 SOX7Q9BT81 388 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 RASL12Q9NYN1 266 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 DNAJC5BQ9UF47 199 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 PISDQ9UG56 409 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MRTO4Q9UKD2 239 aaKnown RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR6C75A6NL08 312 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 KDELR3O43731 214 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 DFFBO76075 338 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR2F2O95006 317 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 HIST1H2ABP04908 130 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MMP10P09238 476 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CNR1P21554 472 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 SLC6A1P30531 599 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 DYNLT1P63172 113 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR2F1Q13607 317 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 GOLGA7BQ2TAP0 167 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 LGALSLQ3ZCW2 172 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 XKR4Q5GH76 650 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 PRPF38BQ5VTL8 546 aaKnown RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR2T5Q6IEZ7 315 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 HIST3H2AQ7L7L0 130 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 FAM126BQ8IXS8 530 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 FAM185AQ8N0U4 392 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 SYT14Q8NB59 555 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR52N4Q8NGI2 321 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR9A1PQ8NGU1 263 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR2T29Q8NH02 315 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 HIST1H2ACQ93077 130 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 OR2M4Q96R27 311 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 DMRTA2Q96SC8 542 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CACNG6Q9BXT2 260 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 GABARAPL3Q9BY60 117 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MAGEB5Q9BZ81 275 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 ACPTQ9BZG2 426 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 EGLN1Q9GZT9 426 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 NOX3Q9HBY0 568 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 COMMD9Q9P000 198 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MUTYHQ9UIF7 546 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 AJAP1Q9UKB5 411 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 A0A0U1RQV5 110 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 TCRBV21S2A2A0A5A6 115 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 UBA6A0AVT1 1052 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3BA6NDS4 549 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 LRRN3E7EW58 273 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CXCR6O00574 342 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 MAGEB4O15481 346 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 BEST1O76090 585 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 TCRBP04435 133 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 GABRB1P18505 474 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 TYMPP19971 482 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 UQCRC2P22695 453 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 GALNSP34059 522 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 EIF4EBP2Q13542 120 aaPredicted RBP3.96□□□□□ -1.78
NEDD4-201ENST00000338963 CAMK2DQ13557 499 aa3.96□□□□□ -1.78
NEDD4-201ENST00000338963 TBC1D3GQ6DHY5 549 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms