RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 Q6ZS92 163 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 PRICKLE2Q7Z3G6 844 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 R3HCC1LQ7Z5L2 792 aaKnown RBP14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 LRRC34Q8IZ02 419 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 ARMC10Q8N2F6 343 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 KRTCAP2Q8N6L1 136 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 OR7G1Q8NGA0 311 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 OR5L2Q8NGL0 311 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF675Q8TD23 568 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 KAT2AQ92830 837 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 CIDECQ96AQ7 238 aaPredicted RBP14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 MTERF3Q96E29 417 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF764Q96H86 408 aaPredicted RBP14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 OR10A5Q9H207 317 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 MYOTQ9UBF9 498 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 BCAP29Q9UHQ4 241 aa14.75□□□□□ -0.05
CCDC28A-201ENST00000332797 OR6C76A6NM76 312 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 TBX19O60806 448 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 OR2J2O76002 312 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 S1PR1P21453 382 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 RPL3P39023 403 aaKnown RBP14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 TNFSF10P50591 281 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 SSR4P51571 173 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 C19orf57Q0VDD7 668 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF169Q14929 603 aaPredicted RBP14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 TLR1Q15399 786 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 TRMT12Q53H54 448 aaKnown RBP14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF468Q5VIY5 522 aaPredicted RBP14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF615Q8N8J6 731 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 OR7A2PQ8NGA2 310 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 NUBPLQ8TB37 319 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 AMDHD1Q96NU7 426 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 WWTR1Q9GZV5 400 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 GLIPR2Q9H4G4 154 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 SLAMF7Q9NQ25 335 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 ATP6V1HQ9UI12 483 aa14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 YARS2Q9Y2Z4 477 aaKnown RBP14.74□□□□□ -0.05
CCDC28A-201ENST00000332797 CROCCQ5TZA2 2017 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF195O14628 629 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 SUV39H1O43463 412 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 DIAPH2O60879 1101 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 CBX7O95931 251 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 ALDOCP09972 364 aaKnown RBP14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 DDX5P17844 614 aaKnown RBP14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 PRPS1L1P21108 318 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 SOX18P35713 384 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 CD96P40200 585 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 EBPQ15125 230 aaKnown RBP14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 OR1C1Q15619 314 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 MPEG1Q2M385 716 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 OGFOD2Q6N063 350 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 RGS9BPQ6ZS82 235 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 TMEM156Q8N614 296 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 Q8NA96 180 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 SIMC1Q8NDZ2 872 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 OR52R1Q8NGF1 315 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 NUDT8Q8WV74 236 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 CTHRC1Q96CG8 243 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 SIGLEC12Q96PQ1 595 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 RASL10BQ96S79 203 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 ANKRA2Q9H9E1 313 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF639Q9UID6 485 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 SPTA1P02549 2419 aa14.73□□□□□ -0.05
CCDC28A-201ENST00000332797 TRAV17A0A0B4J275 112 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 C2orf92A0A1B0GVN3 265 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 TCP11X1B4DZS4 312 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 PRAMEF2O60811 474 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 SORBS2O94875 1100 aaKnown RBP14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 LAMP1P11279 417 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 EFNA1P20827 205 aaPredicted RBP14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 TRHRP34981 398 aaPredicted RBP14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 MC3RP41968 323 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 CYB561P49447 251 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 HLCSP50747 726 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 CLDN8P56748 225 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 HSPB3Q12988 150 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 DUSP8Q13202 625 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 CPTPQ5TA50 214 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 HLA-DQA1Q5Y7H0 255 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 TMEM107Q6UX40 140 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 ZNF551Q7Z340 670 aaPredicted RBP14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 SPATA19Q7Z5L4 167 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 RIMKLAQ8IXN7 391 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 OR7G2Q8NG99 324 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 C16orf52Q8NHV5 167 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 ZFP28Q8NHY6 868 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 ACTRT2Q8TDY3 377 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 ASB15Q8WXK1 588 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 MAELQ96JY0 434 aaKnown RBP14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 OR52B2Q96RD2 323 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 PRPF18Q99633 342 aaKnown RBP14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 DPY30Q9C005 99 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 ATAD3AQ9NVI7 634 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 LRFN1Q9P244 771 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 DTX4Q9Y2E6 619 aa14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 SPENQ96T58 3664 aaKnown RBP14.72□□□□□ -0.05
CCDC28A-201ENST00000332797 COL6A6A6NMZ7 2263 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 TTLL8A6PVC2 850 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 SLC28A2O43868 658 aa14.71□□□□□ -0.05
CCDC28A-201ENST00000332797 GPC1P35052 558 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms